PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

HD-ZIP

Protein Properties

Length: 1032aa MW: 112159 Da PI: 6.6877

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c10_19630V3.4.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	52.1	1.1e-16	169	227	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps +r +L k+ +++ +q+kvWFqNrR +ek+ Pp3c10_19630V3.4.p 169 KYVRYTNEQVEALERVYHECPKPSSIRRHQLIKESpilaNIEPKQIKVWFQNRRCREKQ 227 5678****************************9999*****************97 PP
2	START	154	1.3e-48	356	561	3	203
HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS START 3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 aee+++e+++ka+ ++ W +++ +++g++ + +++ s+++ g a+ra+g+v ++ v e+l+d++ W e+++++e+l ++ +g g++ Pp3c10_19630V3.4.p 356 AEETLTEFLAKATGTAVDWIQLPGMKPGPDAIGIIAISHGCVGIAARACGLVALDAG-KVTEVLKDRPAWLEDCRRMEVLGALPTGnrGTI 445 78999**************************************************.8888888888******************* PP EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS START 92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178 +l +++++a ++l+p Rd+ ++Ry+ l++g +vi+++S++ q+ p+ +s+vR+e++pSg+li+p+++g++ +++v+h d + ++++ Pp3c10_19630V3.4.p 446 ELLYTQMYASTTLAPaRDYCTLRYTTILEDGNLVICERSLTGGQNGPSmppVQSFVRGEMFPSGYLIRPCDGGGCIIHVVDHYDNGPWSVP 536 ****************************************999988899********************************** PP HHHHHHHHHHHHHHHHHHHHHTXXX CS START 179 wllrslvksglaegaktwvatlqrq 203 ++lr+l++s ++ +++ + a+l+++ Pp3c10_19630V3.4.p 537 EVLRPLYESPAVLAQRSTIAALRHL 561 *******************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.3E-18	149	227	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.467	164	228	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.42E-16	165	231	IPR009057	Homeodomain-like
SMART	SM00389	7.2E-14	166	232	IPR001356	Homeobox domain
CDD	cd00086	2.27E-15	169	229	No hit	No description
Pfam	PF00046	3.3E-14	170	227	IPR001356	Homeobox domain
CDD	cd14686	0.00125	221	257	No hit	No description
PROSITE profile	PS50848	21.835	345	545	IPR002913	START domain
CDD	cd08875	2.63E-76	349	565	No hit	No description
SMART	SM00234	1.9E-37	354	564	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	2.8E-20	355	559	IPR023393	START-like domain
SuperFamily	SSF55961	2.31E-35	356	565	No hit	No description
Pfam	PF01852	5.1E-46	356	561	IPR002913	START domain
Pfam	PF08670	3.1E-44	887	1029	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 1032 aa Download sequence Send to blast
MGGSGGEQAG RQEESRGGGG DKNESVRRIC FMGAMPCHRD IGPILHGAYT FRQPSALGLG 60 LRLFCGMNQT LGCAFVCAWS LVHLLSSTPF PPCSPFSKPR YYTPIRLDVI YGTPSSAAVN 120 SDELNLALAH YATRNSAAGD CNPTTAPLQP SARTMTESWK EQTMDSSGKY VRYTNEQVEA 180 LERVYHECPK PSSIRRHQLI KESPILANIE PKQIKVWFQN RRCREKQRKE ATRLVSVNAK 240 LTALNKLLME ENERLAKHAS QLTLENHSLR QQLPSLPLTN GTHRLSSQNL LKKERAVNGG 300 DESSTQGGIC VKLHGQAGVA STDTSCDSAV TGGLPHHLTP RHSPRYTSPA GLLATAEETL 360 TEFLAKATGT AVDWIQLPGM KPGPDAIGII AISHGCVGIA ARACGLVALD AGKVTEVLKD 420 RPAWLEDCRR MEVLGALPTG NRGTIELLYT QMYASTTLAP ARDYCTLRYT TILEDGNLVI 480 CERSLTGGQN GPSMPPVQSF VRGEMFPSGY LIRPCDGGGC IIHVVDHYDN GPWSVPEVLR 540 PLYESPAVLA QRSTIAALRH LRRLAAEESG EGNPRNGQHP AVLRTLGQRL AKGFKNAVNG 600 FADDGWVSTV SDGLDDVSVI LNATSQSMEG QIASDKLLYS LGGGILCAKA SMLLQNVPPS 660 ILIKFLREHR SEWADYDMDA NLATSFRSNG NGYAPQGGGV SHVQLPLPLP NSGEHGEILE 720 VVKLEDHSSV QHMVISRDSF LLQLCSGIDE NAVGASAQLI FAPVDVALTE DIPLLPSGFC 780 ISPVDANVLD EFDLDHTLDL ASTLEGGSDL RLNGDSKSNG TSSHMRSVLT IAFQFAYEVH 840 SHEACAVMAR QYLRTVVSSV QRVAMALAPS RGSAPPRQMS ANPDALSLAR HVLRSYRLHL 900 GLDLTRSENG GDETLFKAFW HHTDAILCCA WKGKPEFVFA NRSGLEMFET TTSSLQELDW 960 DKTLNESDCK LSYATFTQVL QQGYCSLPAG VRMSSSGRTA TYERALVWKV VDDNETVECI 1020 AFLFINWSFV V*

Sequence ? help Back to Top

Protein Sequence Length: 1032 aa Download sequence Send to blast

MGGSGGEQAG RQEESRGGGG DKNESVRRIC FMGAMPCHRD IGPILHGAYT FRQPSALGLG  60
LRLFCGMNQT LGCAFVCAWS LVHLLSSTPF PPCSPFSKPR YYTPIRLDVI YGTPSSAAVN  120
SDELNLALAH YATRNSAAGD CNPTTAPLQP SARTMTESWK EQTMDSSGKY VRYTNEQVEA  180
LERVYHECPK PSSIRRHQLI KESPILANIE PKQIKVWFQN RRCREKQRKE ATRLVSVNAK  240
LTALNKLLME ENERLAKHAS QLTLENHSLR QQLPSLPLTN GTHRLSSQNL LKKERAVNGG  300
DESSTQGGIC VKLHGQAGVA STDTSCDSAV TGGLPHHLTP RHSPRYTSPA GLLATAEETL  360
TEFLAKATGT AVDWIQLPGM KPGPDAIGII AISHGCVGIA ARACGLVALD AGKVTEVLKD  420
RPAWLEDCRR MEVLGALPTG NRGTIELLYT QMYASTTLAP ARDYCTLRYT TILEDGNLVI  480
CERSLTGGQN GPSMPPVQSF VRGEMFPSGY LIRPCDGGGC IIHVVDHYDN GPWSVPEVLR  540
PLYESPAVLA QRSTIAALRH LRRLAAEESG EGNPRNGQHP AVLRTLGQRL AKGFKNAVNG  600
FADDGWVSTV SDGLDDVSVI LNATSQSMEG QIASDKLLYS LGGGILCAKA SMLLQNVPPS  660
ILIKFLREHR SEWADYDMDA NLATSFRSNG NGYAPQGGGV SHVQLPLPLP NSGEHGEILE  720
VVKLEDHSSV QHMVISRDSF LLQLCSGIDE NAVGASAQLI FAPVDVALTE DIPLLPSGFC  780
ISPVDANVLD EFDLDHTLDL ASTLEGGSDL RLNGDSKSNG TSSHMRSVLT IAFQFAYEVH  840
SHEACAVMAR QYLRTVVSSV QRVAMALAPS RGSAPPRQMS ANPDALSLAR HVLRSYRLHL  900
GLDLTRSENG GDETLFKAFW HHTDAILCCA WKGKPEFVFA NRSGLEMFET TTSSLQELDW  960
DKTLNESDCK LSYATFTQVL QQGYCSLPAG VRMSSSGRTA TYERALVWKV VDDNETVECI  1020
AFLFINWSFV V*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.9928	0.0	gametophore\| protonema

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269\|PubMed:17999151}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ657203	0.0	DQ657203.1 Physcomitrella patens class III HD-Zip protein HB13 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024386782.1	0.0	homeobox-leucine zipper protein HOX32-like isoform X1
Refseq	XP_024386783.1	0.0	homeobox-leucine zipper protein HOX32-like isoform X1
Refseq	XP_024386784.1	0.0	homeobox-leucine zipper protein HOX32-like isoform X1
Swissprot	Q6AST1	0.0	HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBL	Q0Q428	0.0	Q0Q428_PHYPA; Class III HD-Zip protein HB13
STRING	PP1S67_107V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP651	16	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34710.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Pp3c10_19630V3.4.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Itoh J,Hibara K,Sato Y,Nagato Y Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice. Plant Physiol., 2008. 147(4): p. 1960-75 [PMID:18567825] Li YY, et al. Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice. Rice (N Y), 2016. 9(1): p. 46 [PMID:27624698]