PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c10_19630V3.10.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HD-ZIP
Protein Properties Length: 869aa    MW: 94706.4 Da    PI: 6.4764
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c10_19630V3.10.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.49e-17664357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         k  ++t+eq+e+Le++++++++ps  +r +L k+     +++ +q+kvWFqNrR +ek+
  Pp3c10_19630V3.10.p  6 KYVRYTNEQVEALERVYHECPKPSSIRRHQLIKESpilaNIEPKQIKVWFQNRRCREKQ 64
                         5678******************************9999*******************97 PP
2START154.49.4e-491933983203
                          HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS
                START   3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 
                          aee+++e+++ka+ ++  W +++ +++g++ + +++ s+++ g a+ra+g+v  ++   v e+l+d++ W e+++++e+l ++ +g  g+
  Pp3c10_19630V3.10.p 193 AEETLTEFLAKATGTAVDWIQLPGMKPGPDAIGIIAISHGCVGIAARACGLVALDAG-KVTEVLKDRPAWLEDCRRMEVLGALPTGnrGT 281
                          78999****************************************************.8888888888********************** PP

                          EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
                START  91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                          ++l +++++a ++l+p Rd+ ++Ry+  l++g +vi+++S++  q+ p+    +s+vR+e++pSg+li+p+++g++ +++v+h d + ++
  Pp3c10_19630V3.10.p 282 IELLYTQMYASTTLAPaRDYCTLRYTTILEDGNLVICERSLTGGQNGPSmppVQSFVRGEMFPSGYLIRPCDGGGCIIHVVDHYDNGPWS 371
                          *********************************************999988899************************************ PP

                          XHHHHHHHHHHHHHHHHHHHHHHTXXX CS
                START 177 phwllrslvksglaegaktwvatlqrq 203
                          ++++lr+l++s ++ +++ + a+l+++
  Pp3c10_19630V3.10.p 372 VPEVLRPLYESPAVLAQRSTIAALRHL 398
                          ***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.467165IPR001356Homeobox domain
SMARTSM003897.2E-14369IPR001356Homeobox domain
SuperFamilySSF466896.42E-16468IPR009057Homeodomain-like
CDDcd000861.76E-15666No hitNo description
PfamPF000462.7E-14764IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-17864IPR009057Homeodomain-like
CDDcd146860.001025894No hitNo description
PROSITE profilePS5084821.835182382IPR002913START domain
CDDcd088757.33E-77186402No hitNo description
SMARTSM002341.9E-37191401IPR002913START domain
Gene3DG3DSA:3.30.530.202.1E-20192396IPR023393START-like domain
PfamPF018523.8E-46193398IPR002913START domain
SuperFamilySSF559612.2E-35193402No hitNo description
PfamPF086702.4E-44724866IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 869 aa     Download sequence    Send to blast
MDSSGKYVRY TNEQVEALER VYHECPKPSS IRRHQLIKES PILANIEPKQ IKVWFQNRRC  60
REKQRKEATR LVSVNAKLTA LNKLLMEENE RLAKHASQLT LENHSLRQQL PSLPLTNGTH  120
RLSSQNLLKK ERAVNGGDES STQGGICVKL HGQAGVASTD TSCDSAVTGG LPHHLTPRHS  180
PRYTSPAGLL ATAEETLTEF LAKATGTAVD WIQLPGMKPG PDAIGIIAIS HGCVGIAARA  240
CGLVALDAGK VTEVLKDRPA WLEDCRRMEV LGALPTGNRG TIELLYTQMY ASTTLAPARD  300
YCTLRYTTIL EDGNLVICER SLTGGQNGPS MPPVQSFVRG EMFPSGYLIR PCDGGGCIIH  360
VVDHYDNGPW SVPEVLRPLY ESPAVLAQRS TIAALRHLRR LAAEESGEGN PRNGQHPAVL  420
RTLGQRLAKG FKNAVNGFAD DGWVSTVSDG LDDVSVILNA TSQSMEGQIA SDKLLYSLGG  480
GILCAKASML LQNVPPSILI KFLREHRSEW ADYDMDANLA TSFRSNGNGY APQGGGVSHV  540
QLPLPLPNSG EHGEILEVVK LEDHSSVQHM VISRDSFLLQ LCSGIDENAV GASAQLIFAP  600
VDVALTEDIP LLPSGFCISP VDANVLDEFD LDHTLDLAST LEGGSDLRLN GDSKSNGTSS  660
HMRSVLTIAF QFAYEVHSHE ACAVMARQYL RTVVSSVQRV AMALAPSRGS APPRQMSANP  720
DALSLARHVL RSYRLHLGLD LTRSENGGDE TLFKAFWHHT DAILCCAWKG KPEFVFANRS  780
GLEMFETTTS SLQELDWDKT LNESDCKLSY ATFTQVLQQG YCSLPAGVRM SSSGRTATYE  840
RALVWKVVDD NETVECIAFL FINWSFVV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.99280.0gametophore| protonema
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6572030.0DQ657203.1 Physcomitrella patens class III HD-Zip protein HB13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024386782.10.0homeobox-leucine zipper protein HOX32-like isoform X1
RefseqXP_024386783.10.0homeobox-leucine zipper protein HOX32-like isoform X1
RefseqXP_024386784.10.0homeobox-leucine zipper protein HOX32-like isoform X1
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLQ0Q4280.0Q0Q428_PHYPA; Class III HD-Zip protein HB13
STRINGPP1S67_107V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Prigge MJ,Clark SE
    Evolution of the class III HD-Zip gene family in land plants.
    Evol. Dev., 2006 Jul-Aug. 8(4): p. 350-61
    [PMID:16805899]
  3. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  4. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]