PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c10_16720V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 506aa MW: 54782.8 Da PI: 8.168 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.1 | 2.2e-18 | 270 | 319 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr ++ +grW AeIrd r r++lg+f+tae+Aa+a++ a+++l+g+ Pp3c10_16720V3.2.p 270 YRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEDAARAYDSAARALRGA 319 9*******.**********32....25*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.38E-20 | 269 | 326 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.128 | 269 | 326 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-31 | 269 | 332 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-28 | 269 | 326 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.71E-29 | 270 | 326 | No hit | No description |
PRINTS | PR00367 | 5.6E-10 | 270 | 281 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-12 | 270 | 318 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-10 | 292 | 308 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence Send to blast |
MASHDMLGGT LLAKRKRREI LPDSCPITRA SAHCLEFSVG SFLSDENPAI QSLLETDCKR 60 RWSSDQFGSG NLSELNPSSF LAGYGESEAE VSPVPHFSED CSSLHGSSAL VKDLDGIAAV 120 VGQTVLFGNK QTSEYNQHHC SFLSTSAVED DYSCWNASTD LQDLNQHASL ATEISTIQDW 180 SFDLTSPAVS YPEVFTAEGL RSALDNFWPT PDNILANPPA EIKSKFQPDI RGCFDDYRHP 240 VVAPTRRAVT DVTKVSAAKA SAATITGRAY RGVRKRPWGR WSAEIRDRIG RCRHWLGTFD 300 TAEDAARAYD SAARALRGAK AKTNFAPPPC SDELKGRVGN TTCNQLPRSN SQPTSRGPTV 360 RRSNSTLQRR SDGNRSTSIT KIPKGSRSSS AKSATRISNE ARATEFMTHP PKKGVPLQSA 420 MSSQLSSHAN VGRDCTGMSA ARSLELDLKL GFGFSPKSSS SLESTQESTA TYQSPECSFP 480 SVSELYSTSP FSPGSPSPLS PFSWR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-16 | 270 | 325 | 15 | 71 | Ethylene-responsive transcription factor ERF096 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024386267.1 | 0.0 | uncharacterized protein LOC112287478 | ||||
TrEMBL | A0A2K1JZB1 | 0.0 | A0A2K1JZB1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S145_10V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80580.1 | 3e-21 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c10_16720V3.2.p |