PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Basic Information? help Back to Top

TF ID

Pp3c10_14310V3.2.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

TCP

Protein Properties

Length: 506aa MW: 51679.6 Da PI: 7.5364

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c10_14310V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118.6	7.5e-37	70	195	2	105
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqq++++i+++tgt++++a ++ ++s +ss+s Pp3c10_14310V3.2.p 70 PPKRTSTKDRHTKVDGRGRRIRMPATCAARIFQLTRELGHKSDGETIEWLLQQSEQSIIAATGTGTIPAIASsIQGSIRSSSS----Mava 156 789*************************************************************9999955532222222222....1222 PP TCP 89 ......................kaaksaakskksqksaa 105 ++++s ++++++q++ Pp3c10_14310V3.2.p 157 aagragihgslglagpgggltaEEMQSRMQQEQAQRERG 195 344556667777888888877533333333333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.8E-34	74	193	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.512	76	130	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence Send to blast
MAAMGGQGVG GGVGQVDPTA LAMAGMGQEY SGNEGQSSGG VGGMGSMSMP GGSGEQQQQQ 60 TPTPPAKKPP PKRTSTKDRH TKVDGRGRRI RMPATCAARI FQLTRELGHK SDGETIEWLL 120 QQSEQSIIAA TGTGTIPAIA SSIQGSIRSS SSMAVAAAGR AGIHGSLGLA GPGGGLTAEE 180 MQSRMQQEQA QRERGEWVTS AGEHVMEVTR AMEASRRISL GHGDPGMSHD MMAGFQHQDL 240 VGGPSEMGEG MESPDSRLRK RPRGTLQSRM KEDPDQPARP VRATARQSMQ QQQQQQVGQG 300 QHQGGGSSSM MPAAMWAVAP VGAGVPSSGA MPGTIWMLPV SASQGGPTSG VMSGQSEQQI 360 WTFPTASGQY RMTAAAGTSI QLGPGGSGGS GQGNAPTSSS SGQAMVPLTA LPSGVALMPR 420 MNVQGGMGPE LQGSHMGHHM PLGSMLLQQG GQQMPGTGLG LGSEGHLGML AALNAYSRNV 480 TSDHQSMGGS GHQQGDSGDD PTSSQ*

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence Send to blast

MAAMGGQGVG GGVGQVDPTA LAMAGMGQEY SGNEGQSSGG VGGMGSMSMP GGSGEQQQQQ  60
TPTPPAKKPP PKRTSTKDRH TKVDGRGRRI RMPATCAARI FQLTRELGHK SDGETIEWLL  120
QQSEQSIIAA TGTGTIPAIA SSIQGSIRSS SSMAVAAAGR AGIHGSLGLA GPGGGLTAEE  180
MQSRMQQEQA QRERGEWVTS AGEHVMEVTR AMEASRRISL GHGDPGMSHD MMAGFQHQDL  240
VGGPSEMGEG MESPDSRLRK RPRGTLQSRM KEDPDQPARP VRATARQSMQ QQQQQQVGQG  300
QHQGGGSSSM MPAAMWAVAP VGAGVPSSGA MPGTIWMLPV SASQGGPTSG VMSGQSEQQI  360
WTFPTASGQY RMTAAAGTSI QLGPGGSGGS GQGNAPTSSS SGQAMVPLTA LPSGVALMPR  420
MNVQGGMGPE LQGSHMGHHM PLGSMLLQQG GQQMPGTGLG LGSEGHLGML AALNAYSRNV  480
TSDHQSMGGS GHQQGDSGDD PTSSQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	256	262	RLRKRPR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024387677.1	0.0	transcription factor TCP22-like
TrEMBL	A0A2K1JZ10	0.0	A0A2K1JZ10_PHYPA; Uncharacterized protein
STRING	PP1S348_6V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72010.1	1e-24	TCP family protein

Link Out ? help Back to Top
Phytozome	Pp3c10_14310V3.2.p