PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.T179100.1
Common NamePOPTR_0017s13610g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 61aa    MW: 6917.34 Da    PI: 6.5307
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.T179100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.30.000634360219
                     HHHHHHHHHHHHHHHHHH CS
              HLH  2 rrahnerErrRRdriNsa 19
                     r  h+e E+rRR++iN++
  Potri.T179100.1 43 RSRHSETEQRRRSKINER 60
                     889*************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.2E-43960IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508888.6454160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 61 aa     Download sequence    Send to blast
MVKSTKSHLD EEDEAEDYDS SSYKGDTAKA DSKSNELKAN ANRSRHSETE QRRRSKINER  60
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.T179100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012088108.12e-22transcription factor BIM2
TrEMBLA0A2K1R3Z92e-33A0A2K1R3Z9_POPTR; Uncharacterized protein
STRINGPOPTR_0017s13610.11e-32(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13601747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-07BES1-interacting Myc-like protein 2