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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.T152900.1 | ||||||||
Common Name | POPTR_0015s01770g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 150aa MW: 16506.1 Da PI: 11.1827 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.3 | 4.9e-12 | 14 | 91 | 13 | 87 |
TT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 13 sgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 ++rl++p f+++ gg ++ + d sgr+W +++++rkk+ v++kGW Fv ++ Lk gD v F +++ Potri.T152900.1 14 KKRLSVPTGFLSSLpsfnaGG---HAVDFQAVDGSGRVWAFRCSIRKKGHPkPVISKGWLAFVASKSLKGGDKVQFLKEKN 91 4679*******9999876433...456788889999*******886665546***********************985544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 5.97E-15 | 3 | 92 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-15 | 4 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.9E-12 | 4 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.2E-9 | 14 | 91 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MARFSKGLRK TDIKKRLSVP TGFLSSLPSF NAGGHAVDFQ AVDGSGRVWA FRCSIRKKGH 60 PKPVISKGWL AFVASKSLKG GDKVQFLKEK NEAGAKTHAY EIRAGKEIKI FGDVLGYAPI 120 TYRGPNNDKH RLILNFRGPN NDKHRLTLT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.T152900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC213428 | 1e-153 | AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024449085.1 | 1e-74 | AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
TrEMBL | B9IDT4 | 1e-105 | B9IDT4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s01770.1 | 1e-106 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2060 | 7 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 3e-08 | related to ABI3/VP1 1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.T152900.1 |
Entrez Gene | 7464553 |