PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.T144800.1
Common NamePOPTR_0011s04000g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 300aa    MW: 34130.1 Da    PI: 6.8785
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.T144800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52e-153986148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W ++Ed++l  ++k++G+++W+  ++  g+ R++k+c+ rw +yl
  Potri.T144800.1 39 RGAWDPDEDQILRAYIKRYGTRNWNEMPKAAGLLRSGKSCRFRWMNYL 86
                     89******************************99************97 PP
2Myb_DNA-binding54.23.4e-1792137148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE + +++++++lG++ W++Ia++++ gRt++++k++w+++l
  Potri.T144800.1  92 RGNFSKEEVQTIIKLHEMLGNR-WSAIAEKLP-GRTDNDIKNFWNTHL 137
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.6983486IPR017930Myb domain
SuperFamilySSF466891.68E-2737133IPR009057Homeodomain-like
SMARTSM007175.5E-133888IPR001005SANT/Myb domain
PfamPF002494.4E-143986IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-214093IPR009057Homeodomain-like
CDDcd001679.52E-104186No hitNo description
PROSITE profilePS5129425.40487141IPR017930Myb domain
SMARTSM007172.1E-1791139IPR001005SANT/Myb domain
PfamPF002493.2E-1692137IPR001005SANT/Myb domain
CDDcd001672.73E-1294137No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2694140IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MTHTAVGCFK VKDVESRNGV SRPEMMSISQ KYQNLCLKRG AWDPDEDQIL RAYIKRYGTR  60
NWNEMPKAAG LLRSGKSCRF RWMNYLRPDI KRGNFSKEEV QTIIKLHEML GNRWSAIAEK  120
LPGRTDNDIK NFWNTHLRKS FNNNISNTAV QAPKLEGTQT SEEESKQRRS SNIIDVSFPT  180
APKILNSEDQ YSSKGTLHMS PIRSTDNFSS SSSSHANGIN ENKRVEDNVG SLESIGELSL  240
LDQPSSMEAQ MGKVEDYGEA YTDQMWVQEL LDYPNASHNF DAGQEFWMNC LMQTQLHGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25371425109B-MYB
1h8a_C2e-253014118128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.T144800.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002317256.30.0transcription factor MYB14
TrEMBLA0A2K1R5C90.0A0A2K1R5C9_POPTR; Uncharacterized protein
STRINGPOPTR_0011s04000.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15840411
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.12e-53myb domain protein 4