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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.T143100.1 |
Common Name | POPTR_0004s08240g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
C2H2 |
Protein Properties |
Length: 239aa MW: 25580.3 Da PI: 5.2758 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.T143100.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 13 | 0.00031 | 106 | 128 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C + F ++ L H++ H
Potri.T143100.1 106 FSCNYCQRKFFSSQALGGHQNAH 128
89*****************9988 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 239 aa
Download sequence Send
to blast |
MKPIIDLEVE ATSENVSEVS SQVASNLSNQ ETSAAPSNDS LTNYSYLTNA IATQSGSEMV 60 SLDLTLCFNN DELGGRDPVG LSLSSTSESS NEPASRTTAE AIPRVFSCNY CQRKFFSSQA 120 LGGHQNAHKR ERTLAKRAIR MGIFSERYAS LASLPLHGSS FRSLGIEAHS SVHQNFAPPV 180 RSLEISSSAR FDQSFRQVAV SDDAHQSFVV AGSSNMIFLG ATPPVNLDDS APDLTLKL*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC209039 | 0.0 | AC209039.1 Populus trichocarpa clone POP009-N17, complete sequence. |