PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.T137400.1
Common NamePOPTR_0018s05770g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 340aa    MW: 37981.9 Da    PI: 5.2716
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.T137400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.92.1e-35141062103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      F+ k+y++++d+++++lisw + +nsf+v+d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+k+ll+
  Potri.T137400.1  14 FVLKIYQMVSDPTTDSLISWGRANNSFIVIDPLDFSQRILPVYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLRGQKQLLK 98 
                      9********************999*****************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i r+k++
  Potri.T137400.1  99 NIVRRKHS 106
                      ****9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.3E-5110103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.5E-3311103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.1E-3711103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.5E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-181437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-185264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-186577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MMEANNNNNI VAPFVLKIYQ MVSDPTTDSL ISWGRANNSF IVIDPLDFSQ RILPVYFKHN  60
NFSSFVRQLN TYGFRKVDPD RWEFANEWFL RGQKQLLKNI VRRKHSSNNK GSSYMQVNIK  120
GEDFDDEDII MEIARLKQEQ KALEQELEGM NKRLEATERR PQQMMAFIYK VVEDPDLLPR  180
MILEKERTRQ IKDKKQRLMI SSSATSPSGM AISSTSTIIK SEVVHEEGSI GVISSPETVF  240
NVDKFCQSSP SPDESDINAI GWLDQVNYGL AVAGPSPFTT GSMGAGIGAT VAVLPQGNST  300
VIGYGGDWGD HINYFGEMAA GVEDRPRPSY PFSLLGGGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A3e-27111037110Heat shock factor protein 1
5hdn_A3e-27111037110Heat shock factor protein 1
5hdn_B3e-27111037110Heat shock factor protein 1
5hdn_C3e-27111037110Heat shock factor protein 1
5hdn_D3e-27111037110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.T137400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0140110.0KP014011.1 Populus simonii heat shock transcription factor C1 (HsfC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324418.20.0heat stress transcription factor C-1
SwissprotQ9LV524e-92HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLB9ILM20.0B9ILM2_POPTR; Uncharacterized protein
STRINGPOPTR_0018s05770.11e-168(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.15e-81heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]