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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.T120700.1 | ||||||||
Common Name | POPTR_0004s07310g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 642aa MW: 70604.9 Da PI: 6.909 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.9 | 4e-19 | 24 | 78 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++++++q+++Le++F+++++p++++r++L+++lgL+ +q+k+WFqN+R+++k Potri.T120700.1 24 KAYHRHSNQQIHQLEKFFKECPHPDENQRRQLSRELGLEAKQIKFWFQNKRTQKK 78 567889**********************************************988 PP | |||||||
2 | START | 58.9 | 1.7e-19 | 289 | 374 | 118 | 206 |
.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 118 lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 l+ g wvi+d+S d ++ + Ra +lpSg++i++ksng skvtwvehv++++r+ h l+r l+ + a ga +w a l+r ce+ Potri.T120700.1 289 LEPGEWVIADISYDFMRDGSP----SRAWRLPSGCMIQDKSNGCSKVTWVEHVEVDDRTQtHRLYRDLICGRSAYGAERWIASLRRICER 374 6789**************986....89*******************************999**************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.4E-20 | 9 | 82 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.09E-17 | 16 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.617 | 20 | 80 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.4E-16 | 22 | 84 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.32E-16 | 24 | 81 | No hit | No description |
Pfam | PF00046 | 1.4E-16 | 25 | 78 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 55 | 78 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 11.568 | 202 | 251 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.3E-12 | 203 | 375 | No hit | No description |
SMART | SM00234 | 0.0048 | 211 | 374 | IPR002913 | START domain |
PROSITE profile | PS50848 | 18.159 | 252 | 377 | IPR002913 | START domain |
Pfam | PF01852 | 3.5E-15 | 289 | 374 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.92E-15 | 395 | 604 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 642 aa Download sequence Send to blast |
MGNNGGASGD EHEAASNSRN QGNKAYHRHS NQQIHQLEKF FKECPHPDEN QRRQLSRELG 60 LEAKQIKFWF QNKRTQKKAQ SERADNSVLR LENERIQCEN LAIIEALKNV ICPACGGPPF 120 GEEERQRSLQ KLKQENARLK EEHEKVSTLL TKYIGKSISQ IDSLTPGAGS SHGVLTTNPG 180 IDLERNPGLD NSQLVYKRRG ILDMEKALMA ETAASAADEL VRLLRVNEPL WIKSPSDGRY 240 ILDRVGYEKL YPRDSHFKSS NARVESSKDS AMVIMPGMDL VDMFLDPQLE PGEWVIADIS 300 YDFMRDGSPS RAWRLPSGCM IQDKSNGCSK VTWVEHVEVD DRTQTHRLYR DLICGRSAYG 360 AERWIASLRR ICERLAFYKE ETAAAREFGG VITSPEGRKS IVNLAHRMVK IFFASLGMSG 420 KLDFPQLSEV HNSGVRVAIR KNTEQGQPIG MVVSAATSLW LPLSPQNVFN FFKDEKSRIQ 480 WDILSNSNPV HVISHISNGT NPGNCISITH PFIPTENNML ILQESCTDSS GSMVVYAPLD 540 IPAMNMVIGG ADSSIIPILP SGFVISGDGR PDTGGDSSTS TSSTGADSGG SLLTVAFQIL 600 VAGPNVTSST ELNMESVATV NTLISTTVLK IKAALNCSNL G* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.T120700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024448785.1 | 0.0 | homeobox-leucine zipper protein ROC8-like | ||||
Swissprot | Q69T58 | 0.0 | ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8 | ||||
TrEMBL | A0A2K1R631 | 0.0 | A0A2K1R631_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s07310.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1026 | 33 | 98 |
Representative plant | OGRP145 | 15 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |
Link Out ? help Back to Top | |
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Phytozome | Potri.T120700.1 |
Entrez Gene | 7494520 |