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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Potri.T101600.1 |
Common Name | POPTR_0017s06710g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
M-type_MADS |
Protein Properties |
Length: 204aa MW: 23168.2 Da PI: 5.0466 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.T101600.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 65.2 | 6.6e-21 | 20 | 68 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
k+ie+ksn qvtfskRr g+ KKA+ELS LC+a+va++ fs+ k++ +
Potri.T101600.1 20 KKIEEKSNLQVTFSKRRGGLVKKASELSLLCGAQVAILAFSPGKKVFAF 68
68****************************************9999877 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 204 aa
Download sequence Send
to blast |
MVMINKRKKQ TQGRQKIEIK KIEEKSNLQV TFSKRRGGLV KKASELSLLC GAQVAILAFS 60 PGKKVFAFGH PDVDMVLDRY LSDSSTAREL GAVSNNDPQV QQWNKEYEEA LKELEEEKKQ 120 VAMAEQWNKV CENDVNARFW WDEPIDDMGL EELEEYVRAM EELKKNVAAR ANELTMASDH 180 FGNQNTSHLD LGVNGFSLEN VLF*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3kov_A | 1e-16 | 13 | 111 | 1 | 87 | Myocyte-specific enhancer factor 2A |
3kov_B | 1e-16 | 13 | 111 | 1 | 87 | Myocyte-specific enhancer factor 2A |
3kov_I | 1e-16 | 13 | 111 | 1 | 87 | Myocyte-specific enhancer factor 2A |
3kov_J | 1e-16 | 13 | 111 | 1 | 87 | Myocyte-specific enhancer factor 2A |
3p57_A | 1e-16 | 13 | 111 | 1 | 87 | Myocyte-specific enhancer factor 2A |
3p57_B | 1e-16 | 13 | 111 | 1 | 87 | Myocyte-specific enhancer factor 2A |
3p57_C | 1e-16 | 13 | 111 | 1 | 87 | Myocyte-specific enhancer factor 2A |
3p57_D | 1e-16 | 13 | 111 | 1 | 87 | Myocyte-specific enhancer factor 2A |
3p57_I | 1e-16 | 13 | 111 | 1 | 87 | Myocyte-specific enhancer factor 2A |
3p57_J | 1e-16 | 13 | 111 | 1 | 87 | Myocyte-specific enhancer factor 2A |
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