PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

M-type_MADS

Protein Properties

Length: 204aa MW: 23343.5 Da PI: 5.4096

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.T101400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	65.3	6.5e-21	20	68	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ie+ksn qvtfskRr g+ KKA+ELS LC+a+va++ fs+ k++ + Potri.T101400.1 20 KQIEEKSNLQVTFSKRRGGLVKKASELSLLCGAQVAILAFSPGKKVFAF 68 68****************************************9999877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	24.348	12	72	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.0E-27	12	71	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.23E-26	13	86	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.29E-33	13	85	No hit	No description
PRINTS	PR00404	6.6E-20	14	34	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.0E-22	22	68	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.6E-20	34	49	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.6E-20	49	70	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MMMLNKRKKQ TQGRQKIEIK QIEEKSNLQV TFSKRRGGLV KKASELSLLC GAQVAILAFS 60 PGKKVFAFGH RDVDMVLDRY LTESSTAGEL GAASNDPQVQ QWNKEYEEAL KELEEEKKHV 120 AMAEQWNKVC ENNVNARFWW DEPIDDMELE ELEEYVRAME ELKKNVAARA NELTMANDHF 180 GNQNMSHHLD LGVHGFSLEN VLF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3kov_A	1e-16	13	110	1	87	Myocyte-specific enhancer factor 2A
3kov_B	1e-16	13	110	1	87	Myocyte-specific enhancer factor 2A
3kov_I	1e-16	13	110	1	87	Myocyte-specific enhancer factor 2A
3kov_J	1e-16	13	110	1	87	Myocyte-specific enhancer factor 2A
3p57_A	1e-16	13	110	1	87	Myocyte-specific enhancer factor 2A
3p57_B	1e-16	13	110	1	87	Myocyte-specific enhancer factor 2A
3p57_C	1e-16	13	110	1	87	Myocyte-specific enhancer factor 2A
3p57_D	1e-16	13	110	1	87	Myocyte-specific enhancer factor 2A
3p57_I	1e-16	13	110	1	87	Myocyte-specific enhancer factor 2A
3p57_J	1e-16	13	110	1	87	Myocyte-specific enhancer factor 2A
5f28_A	2e-16	13	114	2	92	MEF2C
5f28_B	2e-16	13	114	2	92	MEF2C
5f28_C	2e-16	13	114	2	92	MEF2C
5f28_D	2e-16	13	114	2	92	MEF2C
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.T101400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006372987.1	1e-150	agamous-like MADS-box protein AGL62
Refseq	XP_024448636.1	1e-150	agamous-like MADS-box protein AGL62
TrEMBL	U5FKM8	1e-148	U5FKM8_POPTR; Uncharacterized protein
STRING	POPTR_0017s06810.1	1e-142	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF128	33	331
Representative plant	OGRP16	17	761

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	2e-35	AGAMOUS-like 62

Link Out ? help Back to Top
Phytozome	Potri.T101400.1
Entrez Gene	18107011