PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.T094400.1
Common NamePOPTR_0018s10510g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CO-like
Protein Properties Length: 381aa    MW: 41969 Da    PI: 6.4308
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.T094400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.65.1e-081963338
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.........Ht 38
                     +++C+ ++   +  fC+ ++ +lC +C +++H++         H+
  Potri.T094400.1 19 AKRCDSCKTAAAAAFCRADSAFLCLNCDTKIHHSqvnskimsrHE 63
                     579******99********************85546666666665 PP
2zf-B_box27.18.7e-0965110342
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                       ++C+ +e+ ++   C+ +   lC +C   +H+       H++vp+
  Potri.T094400.1  65 VWMCEVCEQAPAAVTCKADAAALCVTCDADIHSAnplarrHERVPI 110
                      689*****************************66899999*99997 PP
3CCT64.53.2e-22307350144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea++lRY+e rk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Potri.T094400.1 307 REARVLRYRERRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 350
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.6651767IPR000315B-box-type zinc finger
SMARTSM003366.8E-51756IPR000315B-box-type zinc finger
Gene3DG3DSA:3.30.40.109.1E-41875IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF006439.1E-62063IPR000315B-box-type zinc finger
CDDcd000212.28E-62167No hitNo description
PROSITE profilePS5011910.9563110IPR000315B-box-type zinc finger
SMARTSM003362.1E-1663110IPR000315B-box-type zinc finger
PfamPF006436.5E-765110IPR000315B-box-type zinc finger
CDDcd000211.54E-966110No hitNo description
PROSITE profilePS5101716.638307349IPR010402CCT domain
PfamPF062031.2E-16307349IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MGIEVESLKN LTGGWSVAAK RCDSCKTAAA AAFCRADSAF LCLNCDTKIH HSQVNSKIMS  60
RHERVWMCEV CEQAPAAVTC KADAAALCVT CDADIHSANP LARRHERVPI EPFYNSAESI  120
VKTSTAFNIL IPGENGVSGY DQNDDVEGVS WLLQSNHTTH DHNSKLQIEN PVVKTGDMFF  180
SEIDPFLELE YQNSIDASYE KIHGGAGADS VVPVQTKPAP LPVINHESCF DIDFCRSKLT  240
SFSYSSQSLS HSVSSSSLDV GVVPDGNSMS DISYPFSRSM NTTTDPSMPL SGWTANQAAT  300
QLAGIDREAR VLRYRERRKN RKFEKTIRYA SRKAYAETRP RIKGRFAKRT EMESDMDNLY  360
NSPSSVPFMA DTQYGVVPSF *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.T094400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2247941e-107CU224794.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006372098.10.0zinc finger protein CONSTANS-LIKE 5
SwissprotQ9FHH81e-124COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLU5FG520.0U5FG52_POPTR; Uncharacterized protein
STRINGPOPTR_0018s10510.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Representative plantOGRP6911767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.13e-94CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]