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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.T094400.1 | ||||||||
Common Name | POPTR_0018s10510g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | CO-like | ||||||||
Protein Properties | Length: 381aa MW: 41969 Da PI: 6.4308 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.6 | 5.1e-08 | 19 | 63 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.........Ht 38 +++C+ ++ + fC+ ++ +lC +C +++H++ H+ Potri.T094400.1 19 AKRCDSCKTAAAAAFCRADSAFLCLNCDTKIHHSqvnskimsrHE 63 579******99********************85546666666665 PP | |||||||
2 | zf-B_box | 27.1 | 8.7e-09 | 65 | 110 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC +C +H+ H++vp+ Potri.T094400.1 65 VWMCEVCEQAPAAVTCKADAAALCVTCDADIHSAnplarrHERVPI 110 689*****************************66899999*99997 PP | |||||||
3 | CCT | 64.5 | 3.2e-22 | 307 | 350 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+e rk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Potri.T094400.1 307 REARVLRYRERRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 350 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.665 | 17 | 67 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 6.8E-5 | 17 | 56 | IPR000315 | B-box-type zinc finger |
Gene3D | G3DSA:3.30.40.10 | 9.1E-4 | 18 | 75 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Pfam | PF00643 | 9.1E-6 | 20 | 63 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.28E-6 | 21 | 67 | No hit | No description |
PROSITE profile | PS50119 | 10.95 | 63 | 110 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.1E-16 | 63 | 110 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.5E-7 | 65 | 110 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.54E-9 | 66 | 110 | No hit | No description |
PROSITE profile | PS51017 | 16.638 | 307 | 349 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.2E-16 | 307 | 349 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MGIEVESLKN LTGGWSVAAK RCDSCKTAAA AAFCRADSAF LCLNCDTKIH HSQVNSKIMS 60 RHERVWMCEV CEQAPAAVTC KADAAALCVT CDADIHSANP LARRHERVPI EPFYNSAESI 120 VKTSTAFNIL IPGENGVSGY DQNDDVEGVS WLLQSNHTTH DHNSKLQIEN PVVKTGDMFF 180 SEIDPFLELE YQNSIDASYE KIHGGAGADS VVPVQTKPAP LPVINHESCF DIDFCRSKLT 240 SFSYSSQSLS HSVSSSSLDV GVVPDGNSMS DISYPFSRSM NTTTDPSMPL SGWTANQAAT 300 QLAGIDREAR VLRYRERRKN RKFEKTIRYA SRKAYAETRP RIKGRFAKRT EMESDMDNLY 360 NSPSSVPFMA DTQYGVVPSF * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.T094400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU224794 | 1e-107 | CU224794.1 Populus EST from leave. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006372098.1 | 0.0 | zinc finger protein CONSTANS-LIKE 5 | ||||
Swissprot | Q9FHH8 | 1e-124 | COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5 | ||||
TrEMBL | U5FG52 | 0.0 | U5FG52_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s10510.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1302 | 34 | 93 | Representative plant | OGRP691 | 17 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 3e-94 | CONSTANS-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Potri.T094400.1 |
Entrez Gene | 7461603 |
Publications ? help Back to Top | |||
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