PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

CO-like

Protein Properties

Length: 370aa MW: 40786.5 Da PI: 6.2445

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.T016900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.4	2.6e-07	15	60	2	41
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++r+C+++ + + +C+ ++ +lC+ C H H++v+ Potri.T016900.1 15 RARVCDTCRAAPCTVYCRADSAYLCAGCDARVHAAnrvasrHERVS 60 6899*****************************6577888898887 PP
2	zf-B_box	27.6	6.1e-09	59	104	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +C+ +e+ ++ l C+ + lC C +H+ H++vp+ Potri.T016900.1 59 VSVCEACERAPAALLCKADAASLCTACDADIHSAnplarrHQRVPI 104 579***************************668999999997 PP
3	CCT	69.1	1.2e-23	300	343	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Potri.T016900.1 300 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRK 343 9*****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	11.462	14	61	IPR000315	B-box-type zinc finger
SMART	SM00336	1.4E-10	14	61	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.1E-5	15	60	IPR000315	B-box-type zinc finger
CDD	cd00021	2.56E-7	17	61	No hit	No description
PROSITE profile	PS50119	11.59	57	104	IPR000315	B-box-type zinc finger
Pfam	PF00643	4.6E-7	59	104	IPR000315	B-box-type zinc finger
CDD	cd00021	3.48E-8	61	104	No hit	No description
SMART	SM00336	3.8E-10	62	104	IPR000315	B-box-type zinc finger
PROSITE profile	PS51017	16.648	300	342	IPR010402	CCT domain
Pfam	PF06203	1.7E-17	300	342	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009416	Biological Process	response to light stimulus
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MLKQESSGGG GGDNRARVCD TCRAAPCTVY CRADSAYLCA GCDARVHAAN RVASRHERVS 60 VCEACERAPA ALLCKADAAS LCTACDADIH SANPLARRHQ RVPILPISGC LHGSPVGPAA 120 GETEDRFTTQ EGEETISEEE EDEAASWLLL NPVKNSKNQN NNGFLFGGEV DEYLDLVEYN 180 SCTENQCSDQ YNQQHYCVPP KSYGGDRAVP IQYGEGKDHQ QQRQYHNFQL GLEYEPSKAA 240 CSYNGSISQS VSMSSMDVGV VPESTMSEIS ISQHRPPKGT MELFSSTAIQ MPSQLSPMDR 300 EARVLRYREK KKTRKFEKTI RYASRKAYAE TRPRIKGRFA KRKDVEVEDD QMFSSTLMAE 360 TGYGIVPSF*

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MLKQESSGGG GGDNRARVCD TCRAAPCTVY CRADSAYLCA GCDARVHAAN RVASRHERVS  60
VCEACERAPA ALLCKADAAS LCTACDADIH SANPLARRHQ RVPILPISGC LHGSPVGPAA  120
GETEDRFTTQ EGEETISEEE EDEAASWLLL NPVKNSKNQN NNGFLFGGEV DEYLDLVEYN  180
SCTENQCSDQ YNQQHYCVPP KSYGGDRAVP IQYGEGKDHQ QQRQYHNFQL GLEYEPSKAA  240
CSYNGSISQS VSMSSMDVGV VPESTMSEIS ISQHRPPKGT MELFSSTAIQ MPSQLSPMDR  300
EARVLRYREK KKTRKFEKTI RYASRKAYAE TRPRIKGRFA KRKDVEVEDD QMFSSTLMAE  360
TGYGIVPSF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.12828	0.0	bud\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed throughout development.
Uniprot	TISSUE SPECIFICITY: Highly expressed in leaves. Expressed at lower levels in stems, flowers and siliques. Not detected in roots.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. Does not affect flowering time.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.T016900.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expressed with a circadian rhythm showing a peak at dawn.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY515151	0.0	AY515151.1 Populus deltoides CONSTANS-like protein CO2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024447845.1	0.0	zinc finger protein CONSTANS-LIKE 2
Refseq	XP_024454227.1	0.0	zinc finger protein CONSTANS-LIKE 2-like
Swissprot	Q96502	1e-141	COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBL	B9H3V0	0.0	B9H3V0_POPTR; Uncharacterized protein
STRING	POPTR_0004s10800.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3827	33	52
Representative plant	OGRP691	17	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	1e-102	CONSTANS-like 2

Link Out ? help Back to Top
Phytozome	Potri.T016900.1
Entrez Gene	7468389

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae. Mol. Biol. Evol., 2015. 32(9): p. 2284-301 [PMID:25972346]