|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Potri.019G130000.1 |
Common Name | POPTR_0019s15040g |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
Family |
bZIP |
Protein Properties |
Length: 387aa MW: 41818.3 Da PI: 6.4455 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.019G130000.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 30.4 | 8.5e-10 | 188 | 244 | 5 | 61 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61
kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l + l s
Potri.019G130000.1 188 KRAKRILANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLTLFQRDTTGLSS 244
9****************************************9998877666655555 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 387 aa
Download sequence Send
to blast |
MSSSMETQDP QSKPPQNSDP TKPHNPNPTT PPASSMLNNI RGGALHRRAR SEMSFRLPED 60 MTMMMMDIHP SDQINGGNGN GNGNGGGGSS TGSLEEIGSE DDLFSTYIDV DKLTGGNSGN 120 GAGGGVQNDN DNNMNGEKAG VSGSGTSRPK HRHSNSVDGS VFGGGEVMDA KKAMPPDKLA 180 ELWNIDPKRA KRILANRQSA ARSKERKARY ILELERKVQT LQTEATTLSA QLTLFQRDTT 240 GLSSENTELK LRLQAMEQQA QLRDALNEAL KKEVERLRIA TGEMVSPSES FNLGMHQMPF 300 TQPNFFPLPP QPGSSGHPNM QLPSFTHTPP SMSTHHLQQA DSHNLSDYMQ NDPIRQLQGL 360 DISNKGLNIV KSEGPSLSAS ENSSTF*
|
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed at high levels in roots, low level in leaf sheath, but not in leaf blade. Predominantly expressed in vascular tissues. {ECO:0000269|PubMed:14704272}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AC214418 | 1e-135 | AC214418.1 Populus trichocarpa clone POP106-D21, complete sequence. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Dai S,Zhang Z,Bick J,Beachy RN
Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] - Liu Y,Dai S,Beachy RN
Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] - Dai S, et al.
Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]
|