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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.019G118900.1 | ||||||||
Common Name | POPTR_0019s14140g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 251aa MW: 28403.5 Da PI: 4.5361 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.8 | 1.8e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l +v+++G+ +W+ +++ g+ R++k+c++rw++yl Potri.019G118900.1 14 KGAWTPEEDMKLMAYVTRYGSWNWRQLPKYAGLQRCGKSCRLRWLNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.6 | 6.1e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+eE+e+++ +++ lG++ W++Ia+ ++ gRt++++k++w++ Potri.019G118900.1 67 RGNYTKEEEEIIISLHETLGNR-WSAIAAQLP-GRTDNEIKNHWHTN 111 899*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.637 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.03E-30 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.80E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.85 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.09E-13 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MARTPCCDKT ELKKGAWTPE EDMKLMAYVT RYGSWNWRQL PKYAGLQRCG KSCRLRWLNY 60 LRPNIKRGNY TKEEEEIIIS LHETLGNRWS AIAAQLPGRT DNEIKNHWHT NLKKRLSEKS 120 VEATRSCSDD DKGQEKDTGE TEVNKQIPAN SAQIIESSSS ALSPQASSGD FSTTDNIAAT 180 NMDLVSDDDL SFLEAYEIPS GNFWTEPFLS DDYFMPNDFL APLVNPDSPI FDGEISSPFA 240 FINTEDYNLY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-30 | 11 | 116 | 4 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.019G118900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002325681.1 | 0.0 | transcription factor MYB4 | ||||
TrEMBL | B9INU3 | 0.0 | B9INU3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0019s14140.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 2e-63 | myb domain protein 14 |
Link Out ? help Back to Top | |
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Phytozome | Potri.019G118900.1 |
Entrez Gene | 7498161 |