PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G118700.1
Common NamePOPTR_0019s14120g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 263aa    MW: 30284.4 Da    PI: 4.6448
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G118700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.3e-151461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEd++l  +v+++G  +W+  +r  g+ R++k+c++rw +yl
  Potri.019G118700.1 14 KGAWSKEEDDKLRVYVQKYGHWNWRQLPRFAGLSRCGKSCRLRWMNYL 61
                        79******************99************************97 PP
2Myb_DNA-binding54.42.8e-1767111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg+++ eEd l+++ +++lG++ W+ Ia +++ gRt++++k++w++ 
  Potri.019G118700.1  67 RGNFSDEEDNLIIQMHEELGNK-WSIIAGKLP-GRTDNEIKNHWHTN 111
                         89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.28961IPR017930Myb domain
SuperFamilySSF466893.88E-3111108IPR009057Homeodomain-like
SMARTSM007175.4E-121363IPR001005SANT/Myb domain
PfamPF002498.7E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-231568IPR009057Homeodomain-like
CDDcd001671.98E-91661No hitNo description
PROSITE profilePS5129427.1162116IPR017930Myb domain
SMARTSM007173.3E-1666114IPR001005SANT/Myb domain
PfamPF002492.1E-1567111IPR001005SANT/Myb domain
CDDcd001671.29E-1169112No hitNo description
Gene3DG3DSA:1.10.10.608.4E-2669116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MVKATLVDKN GLRKGAWSKE EDDKLRVYVQ KYGHWNWRQL PRFAGLSRCG KSCRLRWMNY  60
LRPDVKRGNF SDEEDNLIIQ MHEELGNKWS IIAGKLPGRT DNEIKNHWHT NLSKRVKQSQ  120
SVSSELVNKE QSSETSESED SQAEKSETES VSVNTPSEPD RHPKIVENIP SPQEISCSEL  180
SSMNNDYVSG MNGAADSFSP MEIFQDSGFW NQPFIADNND SQDGYHSLLF TEEVYMPSYP  240
FNYDDDSMNW IQQMMQELQD SY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-281211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G118700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325683.20.0transcription repressor MYB6
TrEMBLB9INU50.0B9INU5_POPTR; Uncharacterized protein
STRINGPOPTR_0019s14120.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-52myb domain protein 9