PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G102200.1
Common NamePOPTR_0019s13330g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 465aa    MW: 51554.8 Da    PI: 6.0081
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G102200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.7e-18231281256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f+ ae+Aa a+++ + kl+ge
  Potri.019G102200.1 231 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDNAEDAALAYDREAFKLRGE 281
                         59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.70E-31230290No hitNo description
Gene3DG3DSA:3.30.730.103.1E-31231289IPR001471AP2/ERF domain
PROSITE profilePS5103222.497231288IPR001471AP2/ERF domain
SMARTSM003801.2E-38231294IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-22231289IPR016177DNA-binding domain
PfamPF008473.1E-11232281IPR001471AP2/ERF domain
PRINTSPR003676.2E-10232243IPR001471AP2/ERF domain
PRINTSPR003676.2E-10254270IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MDSAKNNTGK SKKGVVDETQ RLAMDQDWQL DRGRKEADIS FERRHWKPVF GEASLSDRPS  60
KKIRSPERQE QTQSSAYLAH QLPPSFSVSS SSASTLSLYP PSLSSSPVSS SSSKLQFPFA  120
FEGSNQPVQF HQQVGTNPSS TIFRPPSQVA QNQQQMISFG QNQQYGIAYP PFFAGESALA  180
NQQQQQQQLF QYWNDALNLS PRGRMMMMNR LGPNGRPLFR PPIQPINTTK LYRGVRQRHW  240
GKWVAEIRLP RNRTRLWLGT FDNAEDAALA YDREAFKLRG ENAKLNFPEL FLNKEKETST  300
APSSSVSSPP TPNQSSMPKQ AQEGINLQVE TMPPPPPPEQ PQGDHPDDDS GLGSSGATVS  360
DEVQAVGSSA GEGTSGSQEL MWGDMAEAWY NAIQAGWGPG SPVWDDLDTT NNFLLQSHLP  420
FVTPNQQQFT DSSDLQRQQD NMGSASSSSS SSFPTKPFFW KDQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-20230288160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in abiotic stress tolerance. Can directly regulate stress-related gene expression by binding to the DNA sequence 5'-[AG]CCGAC-3' (DRE element) of their promoter region. Involved in the regulation of stomatal closure movement under drought stress (PubMed:23625358). Acts as a positive regulator of drought stress response (PubMed:22095047). {ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G102200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress (PubMed:18550687, PubMed:22095047, PubMed:23625358). Induced by salt stress (PubMed:22095047). Induced by abscisic acid (ABA) and heat stress (PubMed:23625358). {ECO:0000269|PubMed:18550687, ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2140330.0AC214033.1 Populus trichocarpa clone POP046-C14, complete sequence.
GenBankEF1559420.0EF155942.1 Populus trichocarpa RAP2-like protein (RAP2L1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006371578.20.0ethylene-responsive transcription factor ERF054
SwissprotQ9SKT11e-60ERF53_ARATH; Ethylene-responsive transcription factor ERF053
TrEMBLA0A2K1WSA90.0A0A2K1WSA9_POPTR; Uncharacterized protein
STRINGPOPTR_0019s13330.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-59ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cheng MC,Hsieh EJ,Chen JH,Chen HY,Lin TP
    CORRECTION. Arabidopsis RGLG2, Functioning as a RING E3 Ligase, Interacts with AtERF53 and Negatively Regulates the Plant Drought Stress Response.
    Plant Physiol., 2016. 170(2): p. 1162-3
    [PMID:26826724]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]