PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G099800.1
Common NamePOPTR_0019s13130g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 350aa    MW: 39181 Da    PI: 5.967
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G099800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM83.34.8e-2681333128
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkya..tgkrknratksgyWkatgkd 89 
                         +G rF+Pt eel++++L +k+ g+++ + + i+ +d+y+++PwdLp    +++++ e yfFs+ + ky+  ++ r nr+t++g W a+gkd
  Potri.019G099800.1   8 VGDRFSPTKEELITHFLMQKLLGNDHLV-SRITLLDVYQSDPWDLPyFaGTDSDDGEGYFFSPLHPKYPgtNNGRINRSTRTGSWLAKGKD 97 
                         689**********************877.77***************523555566699**********976788***************** PP

                 NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          e++s+ +ge++g+++++v     +++    + vmhe+++
  Potri.019G099800.1  98 YEITSQhNGEVIGIRRIFVHS--CNKD--GIKYVMHEFSI 133
                         ****9988999*******997..3334..4689****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100529.4456162IPR003441NAC domain
SuperFamilySSF1019411.26E-316147IPR003441NAC domain
PfamPF023656.8E-148133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MTPSEYNVGD RFSPTKEELI THFLMQKLLG NDHLVSRITL LDVYQSDPWD LPYFAGTDSD  60
DGEGYFFSPL HPKYPGTNNG RINRSTRTGS WLAKGKDYEI TSQHNGEVIG IRRIFVHSCN  120
KDGIKYVMHE FSIPNQNSLV LCKVMKKMPS KKSGGTCKKV KKRKEAAELP LPICNEDNST  180
LSSGLMKKKM PDKKSAGPCK KVKSSEKKAD HMPYNEENIT PVPDEGFDFE NWITSVMSDY  240
NNIIDNKEQQ TEKSTFDNGG TNCLKTSSAS VYHVADSTTP EDHQGGPEIL PHLQSFSGYD  300
QQDLSLHDFT LDDLPLMLPE QVNTSNGPAG TSMSVPKDDL YIWLEPLWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-18915220170NO APICAL MERISTEM PROTEIN
1ut4_B5e-18915220170NO APICAL MERISTEM PROTEIN
1ut7_A5e-18915220170NO APICAL MERISTEM PROTEIN
1ut7_B5e-18915220170NO APICAL MERISTEM PROTEIN
3swm_A5e-18915223173NAC domain-containing protein 19
3swm_B5e-18915223173NAC domain-containing protein 19
3swm_C5e-18915223173NAC domain-containing protein 19
3swm_D5e-18915223173NAC domain-containing protein 19
3swp_A5e-18915223173NAC domain-containing protein 19
3swp_B5e-18915223173NAC domain-containing protein 19
3swp_C5e-18915223173NAC domain-containing protein 19
3swp_D5e-18915223173NAC domain-containing protein 19
4dul_A5e-18915220170NAC domain-containing protein 19
4dul_B5e-18915220170NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157163KKVKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G099800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2859781e-121GU285978.1 Populus balsamifera isolate FBK13 haplotype A unknown protein gene, partial sequence.
GenBankGU2859791e-121GU285979.1 Populus balsamifera isolate FBK13 haplotype B unknown protein gene, partial sequence.
GenBankGU2859801e-121GU285980.1 Populus balsamifera isolate FRE01 haplotype A unknown protein gene, partial sequence.
GenBankGU2859811e-121GU285981.1 Populus balsamifera isolate FRE01 haplotype B unknown protein gene, partial sequence.
GenBankGU2859821e-121GU285982.1 Populus balsamifera isolate GIL14 haplotype A unknown protein gene, partial sequence.
GenBankGU2859831e-121GU285983.1 Populus balsamifera isolate GIL14 haplotype B unknown protein gene, partial sequence.
GenBankGU2859841e-121GU285984.1 Populus balsamifera isolate INU03 haplotype A unknown protein gene, partial sequence.
GenBankGU2859851e-121GU285985.1 Populus balsamifera isolate INU03 haplotype B unknown protein gene, partial sequence.
GenBankGU2859861e-121GU285986.1 Populus balsamifera isolate KUU07 haplotype A unknown protein gene, partial sequence.
GenBankGU2859871e-121GU285987.1 Populus balsamifera isolate KUU07 haplotype B unknown protein gene, partial sequence.
GenBankGU2859881e-121GU285988.1 Populus balsamifera isolate LOV02 haplotype A unknown protein gene, partial sequence.
GenBankGU2859891e-121GU285989.1 Populus balsamifera isolate LOV02 haplotype B unknown protein gene, partial sequence.
GenBankGU2859901e-121GU285990.1 Populus balsamifera isolate MGR10 haplotype A unknown protein gene, partial sequence.
GenBankGU2859911e-121GU285991.1 Populus balsamifera isolate MGR10 haplotype B unknown protein gene, partial sequence.
GenBankGU2859921e-121GU285992.1 Populus balsamifera isolate NWL07 haplotype A unknown protein gene, partial sequence.
GenBankGU2859931e-121GU285993.1 Populus balsamifera isolate NWL07 haplotype B unknown protein gene, partial sequence.
GenBankGU2859941e-121GU285994.1 Populus balsamifera isolate POR11 haplotype A unknown protein gene, partial sequence.
GenBankGU2859951e-121GU285995.1 Populus balsamifera isolate POR11 haplotype B unknown protein gene, partial sequence.
GenBankGU2859961e-121GU285996.1 Populus balsamifera isolate RNA13 haplotype A unknown protein gene, partial sequence.
GenBankGU2859971e-121GU285997.1 Populus balsamifera isolate RNA13 haplotype B unknown protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006371555.10.0NAC domain-containing protein 91 isoform X4
TrEMBLU5FIV50.0U5FIV5_POPTR; Uncharacterized protein
STRINGPOPTR_0019s13130.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2314134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.22e-25TCV-interacting protein