PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G099500.1
Common NamePOPTR_0019s13090g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 233aa    MW: 26157.6 Da    PI: 8.241
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G099500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.3e-094090355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                        +  + +Er+RR++++s ++ L +llP+ +    ++     +   +A++YIksL+
  Potri.019G099500.1 40 TERKVVERNRRNQMKSLYSSLNSLLPNqN---FKEAQPLPDQIDRAINYIKSLE 90
                        567899*********************55...677799999***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-1137107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.0843789IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-1139108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-64190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-44395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MDLPSSLVCL RFPRGVMVAK TGGTIMQSRS GRSNISSTKT ERKVVERNRR NQMKSLYSSL  60
NSLLPNQNFK EAQPLPDQID RAINYIKSLE EKLEKAREKK ESLARSRKRS YTCTFDPISS  120
AASKSPQLKI HEIGSALEIV LTSGLDNQFL FYEIISILHE EGVEVVSSNF QALGDSFFHI  180
VHAQMKGSAD GFGAARVTER LNRFISGSTS EIELDSELWD FAVHHPETNW EF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G099500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006371551.11e-172transcription factor bHLH162
TrEMBLU5FEU01e-158U5FEU0_POPTR; Uncharacterized protein
STRINGPOPTR_0019s13090.11e-172(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-20bHLH family protein