PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G092200.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 202aa    MW: 22822.8 Da    PI: 8.8679
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G092200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.81.5e-3719115197
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         aCa+Ck++r++C++dC+lapyfpae++++f++vhk+FG+snv+kl+k+++ee+r+++++slv+eA +r++dPv+G++g +++l+++l+  k
  Potri.019G092200.1  19 ACASCKHQRKRCTEDCALAPYFPAEKTQEFQAVHKVFGVSNVVKLVKDVSEERRKETADSLVWEALCRQNDPVSGCYGKFKRLKEELDLYK 109
                         7***************************************************************************************999 PP

              DUF260  92 aelall 97 
                         ++  +l
  Potri.019G092200.1 110 TQHPSL 115
                         886655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.26418119IPR004883Lateral organ boundaries, LOB
PfamPF031953.8E-3619112IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MQRENNSDNN NNRTLVHPAC ASCKHQRKRC TEDCALAPYF PAEKTQEFQA VHKVFGVSNV  60
VKLVKDVSEE RRKETADSLV WEALCRQNDP VSGCYGKFKR LKEELDLYKT QHPSLNQNQN  120
GQQQGGVVYN KQSPVMVYGI NNRANGIGGG GLANNNMINQ SAKEMLVLFF FHHHRRCHIT  180
IPSMDLINNN TIFQVISLYA N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-232011112110LOB family transfactor Ramosa2.1
5ly0_B4e-232011112110LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G092200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024446755.11e-115LOB domain-containing protein 2
TrEMBLA0A3N7HDC41e-113A0A3N7HDC4_POPTR; Uncharacterized protein
STRINGPOPTR_0019s12200.11e-113(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127222534
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.14e-43LOB domain-containing protein 2