PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G073300.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 187aa    MW: 20049.3 Da    PI: 6.7888
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G073300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.73.3e-142978255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++kG r++k +g+Wv+eIr p   gk+ r +lg++ t+e Aa a++ a  +l+g
  Potri.019G073300.1 29 KFKGARRRK-WGKWVSEIRIP---GKQERLWLGSYSTPEAAAVAHDIASYCLRG 78
                        799999888.**********8...556*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-232888IPR001471AP2/ERF domain
PROSITE profilePS5103221.3642988IPR001471AP2/ERF domain
SMARTSM003801.4E-262994IPR001471AP2/ERF domain
PfamPF008471.2E-72978IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-162989IPR016177DNA-binding domain
CDDcd000181.70E-232988No hitNo description
PRINTSPR003672.7E-73041IPR001471AP2/ERF domain
PRINTSPR003672.7E-75268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MSGSSGGSSS SSSSRIIDQE SGASASQRKF KGARRRKWGK WVSEIRIPGK QERLWLGSYS  60
TPEAAAVAHD IASYCLRGPS SLESLNFPLM LPASVREDMS PKSIQKAASD AGMAIDAQMI  120
LNRSLQNEVK VGPENVAINH GPQTQLWEPA AGGGGDSSNR CENWHENNIG TRVGDDLNIS  180
IEDYLM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-132288772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00158DAPTransfer from AT1G22810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G073300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2130880.0AC213088.1 Populus trichocarpa clone POP086-B14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325945.31e-134ethylene-responsive transcription factor ERF020
TrEMBLA0A2K1WR071e-133A0A2K1WR07_POPTR; Uncharacterized protein
STRINGPOPTR_0019s10220.11e-124(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54893054
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22810.16e-46ERF family protein