PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

ERF

Protein Properties

Length: 194aa MW: 21276.9 Da PI: 6.5375

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.019G067400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	52.4	1.3e-16	36	84	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +gr+v+eIr p gk++r++lg+fg++e+Aa+a++ a+ l+g Potri.019G067400.1 36 FHGVRKRS-WGRYVSEIRLP---GKKTRVWLGSFGSPEMAARAHDSAAFFLKG 84 79*888.******8...557*********************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	19.506	35	92	IPR001471	AP2/ERF domain
SMART	SM00380	9.0E-29	35	98	IPR001471	AP2/ERF domain
Pfam	PF00847	1.8E-10	36	84	IPR001471	AP2/ERF domain
CDD	cd00018	3.59E-27	36	94	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.2E-27	36	94	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.7E-7	36	47	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.96E-18	36	94	IPR016177	DNA-binding domain
PRINTS	PR00367	2.7E-7	58	74	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MSITQEPPGL KTNPLESEPT SERKSKKRTR QRDAPFHGVR KRSWGRYVSE IRLPGKKTRV 60 WLGSFGSPEM AARAHDSAAF FLKGNSACLN FPDSVGSLPR PKSCSSKDIQ LAAAKAATGF 120 DETRVGNVVG FEDCESGGEP DSSIWLGLGE IETVSYEEVK RTPLLSPLRF DSVSGNDEVL 180 YMNDEELLFA TYL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	5e-14	36	97	6	68	ATERF1
3gcc_A	5e-14	36	97	6	68	ATERF1
5wx9_A	9e-14	36	92	15	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	25	41	KKRTRQRDAPFHGVRKR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.019G067400.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by cold stress. {ECO:0000269\|PubMed:11798174}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF155935	0.0	EF155935.1 Populus trichocarpa TINY-like protein (TINYL16) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006388007.2	1e-141	ethylene-responsive transcription factor ERF023
Swissprot	Q39127	4e-33	TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBL	A0A2K1WQR6	1e-140	A0A2K1WQR6_POPTR; Uncharacterized protein
STRING	POPTR_0409s00200.1	1e-138	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13756	16	21
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25810.1	1e-35	ERF family protein

Link Out ? help Back to Top
Phytozome	Potri.019G067400.1
Entrez Gene	18108399

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]