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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Potri.019G040900.1 |
| Common Name | POPTR_0019s05740g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
MYB |
| Protein Properties |
Length: 380aa MW: 42093 Da PI: 8.2298 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.019G040900.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 52.6 | 1e-16 | 118 | 163 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg W + Ed +l+++v+q+G+ +W++Ia+ + gR++k+c++rw++
Potri.019G040900.1 118 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLE-GRSGKSCRLRWFNQ 163
899*****************************.***********996 PP
|
| 2 | Myb_DNA-binding | 56.9 | 4.8e-18 | 170 | 213 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
r+++T+eE+e+l+ a++++G++ W+ I+r ++ gRt++ +k++w+
Potri.019G040900.1 170 RKAFTEEEEERLLAAHRLYGNK-WAMISRLFP-GRTDNAVKNHWHV 213
789*******************.*********.***********96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 380 aa
Download sequence Send
to blast |
MSLQHLMSDK YVFNGYQDMN FLPSPPPSHL SLSHAFGVMG QPGETGTSNP QMGFQILSHP 60
MGQDRKPRSI QQLESRGADM SDVDFGVQKK SLSLNPGEEE ELKTSALGRN GHTKLCARGH 120
WRPAEDAKLK ELVAQYGPQN WNLIAENLEG RSGKSCRLRW FNQLDPGINR KAFTEEEEER 180
LLAAHRLYGN KWAMISRLFP GRTDNAVKNH WHVIMARKHR ENSSVYRRRK PTSSSQILPK 240
GSLNVTLQNN ACSESTTITS TIEESGSTCT DLSLTPSSTK VPARLFTRFS PQGSQRGLSA 300
EKEATVGNVD FDEFYGSSNG FYQNGPMMVV TRVDQSGQSD SNSEDSATGS VVTNRANLCE 360
NRNERINMPF IDFLGVGAT*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: During anther development, expressed in anther vacuolar tissue from stage 9 to stage 13. {ECO:0000269|PubMed:20305120}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in root vascular tissue, primordia of lateral roots, leaf collar, and veins of lemma, palea and pistil. {ECO:0000269|PubMed:20305120}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EF148209 | 1e-143 | EF148209.1 Populus trichocarpa clone WS0128_M01 unknown mRNA. |
| Publications
? help Back to Top |
- Leonard LM,Follette VM
Sexual functioning in women reporting a history of child sexual abuse: review of the empirical literature and clinical implications.
Annu Rev Sex Res, 2002. 13: p. 346-88
[PMID:12836736] - Wang L,Li X,Chen Z
Sulfated modification of the polysaccharides obtained from defatted rice bran and their antitumor activities.
Int. J. Biol. Macromol., 2009. 44(2): p. 211-4
[PMID:19135473] - Wang L,Huang H,Wei Y,Li X,Chen Z
Characterization and anti-tumor activities of sulfated polysaccharide SRBPS2a obtained from defatted rice bran.
Int. J. Biol. Macromol., 2009. 45(4): p. 427-31
[PMID:19549538] - Zhang H, et al.
Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development.
Plant Cell, 2010. 22(3): p. 672-89
[PMID:20305120] - Zhang H, et al.
Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production.
Proc. Natl. Acad. Sci. U.S.A., 2013. 110(1): p. 76-81
[PMID:23256151] - Zhu X, et al.
Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein.
Plant J., 2015. 82(4): p. 570-81
[PMID:25754973] - Li X, et al.
Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.
Plant Cell Environ., 2015. 38(10): p. 2171-92
[PMID:25828772] - Shaar-Moshe L,Hübner S,Peleg Z
Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach.
BMC Plant Biol., 2015. 15: p. 111
[PMID:25935420]
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