PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G040700.1
Common NamePOPTR_0019s05720g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Dof
Protein Properties Length: 494aa    MW: 53501.2 Da    PI: 5.3718
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G040700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.81e-37100159261
              zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                         ++k+l+cprC+  +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ 
  Potri.019G040700.1 100 PDKILPCPRCNCLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHL 159
                         7899*****************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-2993157IPR003851Zinc finger, Dof-type
PfamPF027012.2E-30102158IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.239104158IPR003851Zinc finger, Dof-type
PROSITE patternPS013610106142IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MKGESKDPAF KLFGRKIPVP DTQFPAEPLA KGSCSDITKL ETKGPSEENS EEPEMFSALG  60
QGEEEIQAAM QVNETEVIAK PKEGQLETNG TDKERVFKKP DKILPCPRCN CLDTKFCYFN  120
NYNVNQPRHF CKNCQRYWTA GGTMRNVPIG AGRRKNKHLA TQYRQILVSS DGMPIARMEN  180
SDSAGHQLSS SVESATTLSP STANGTVLKF GPEAPLCDSM ETVLNLGDPK RYVEMSSVNY  240
QDNGEEPPSC GSSKASFIVC ENELPENIMQ EQVDMPASSN NLSAPHSLLC YSVPSWVFPW  300
NPAWNNETSM AAAQYSSGQA CITNVPTQVQ LCPTPMLAVP SICPPNIPLQ FVPASYWGCM  360
PTWTAGTGNV PLCGSNGCLT PSSSTTTSYC SGNGSPKLGK HSRDSKFMDE EKTEKCILVP  420
KTLRIDDPSE ASKSPLRATF GLPPAQKDPT SKGTIFKNFE TKAEGCGHVS DATNVLEANP  480
AALSRSQTFQ ESG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G040700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325441.20.0cyclic dof factor 3 isoform X1
TrEMBLA0A2K1WPB40.0A0A2K1WPB4_POPTR; Uncharacterized protein
STRINGPOPTR_0019s05720.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35023165
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.25e-43cycling DOF factor 2