PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.019G040700.1 | ||||||||
Common Name | POPTR_0019s05720g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Dof | ||||||||
Protein Properties | Length: 494aa MW: 53501.2 Da PI: 5.3718 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 119.8 | 1e-37 | 100 | 159 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+ +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ Potri.019G040700.1 100 PDKILPCPRCNCLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHL 159 7899*****************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-29 | 93 | 157 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.2E-30 | 102 | 158 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.239 | 104 | 158 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 106 | 142 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 494 aa Download sequence Send to blast |
MKGESKDPAF KLFGRKIPVP DTQFPAEPLA KGSCSDITKL ETKGPSEENS EEPEMFSALG 60 QGEEEIQAAM QVNETEVIAK PKEGQLETNG TDKERVFKKP DKILPCPRCN CLDTKFCYFN 120 NYNVNQPRHF CKNCQRYWTA GGTMRNVPIG AGRRKNKHLA TQYRQILVSS DGMPIARMEN 180 SDSAGHQLSS SVESATTLSP STANGTVLKF GPEAPLCDSM ETVLNLGDPK RYVEMSSVNY 240 QDNGEEPPSC GSSKASFIVC ENELPENIMQ EQVDMPASSN NLSAPHSLLC YSVPSWVFPW 300 NPAWNNETSM AAAQYSSGQA CITNVPTQVQ LCPTPMLAVP SICPPNIPLQ FVPASYWGCM 360 PTWTAGTGNV PLCGSNGCLT PSSSTTTSYC SGNGSPKLGK HSRDSKFMDE EKTEKCILVP 420 KTLRIDDPSE ASKSPLRATF GLPPAQKDPT SKGTIFKNFE TKAEGCGHVS DATNVLEANP 480 AALSRSQTFQ ESG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.019G040700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002325441.2 | 0.0 | cyclic dof factor 3 isoform X1 | ||||
TrEMBL | A0A2K1WPB4 | 0.0 | A0A2K1WPB4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0019s05720.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3502 | 31 | 65 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 5e-43 | cycling DOF factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Potri.019G040700.1 |
Entrez Gene | 7459189 |