PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G036300.1
Common NamePOPTR_0019s05200g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 310aa    MW: 34550.9 Da    PI: 9.2285
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G036300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.4e-182774148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEdell++++++ G g+W+t +++ g+ R++k+c++rw +yl
  Potri.019G036300.1 27 KGPWTPEEDELLANYIRKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 74
                        79******************************99************97 PP
2Myb_DNA-binding45.61.6e-1480124147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rgr  ++E++l+++++++lG++ W+ Ia +++ gRt++++k++w++ 
  Potri.019G036300.1  80 RGRIAPDEEDLILRLHRLLGNR-WSMIAGRIP-GRTDNEIKNYWNTC 124
                         678889****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-221876IPR009057Homeodomain-like
PROSITE profilePS5129416.9342274IPR017930Myb domain
SuperFamilySSF466894.87E-2924121IPR009057Homeodomain-like
SMARTSM007171.3E-132676IPR001005SANT/Myb domain
PfamPF002494.9E-162774IPR001005SANT/Myb domain
CDDcd001672.01E-112974No hitNo description
PROSITE profilePS5129423.81575129IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2377130IPR009057Homeodomain-like
SMARTSM007171.3E-1279127IPR001005SANT/Myb domain
PfamPF002491.9E-1281124IPR001005SANT/Myb domain
CDDcd001673.38E-1085123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MRNLCSTTST RSRSVPTPCC SKVGIKKGPW TPEEDELLAN YIRKEGEGRW RTLPKRAGLL  60
RCGKSCRLRW MNYLRPSVKR GRIAPDEEDL ILRLHRLLGN RWSMIAGRIP GRTDNEIKNY  120
WNTCLSKKLI SQGIDPRTHK PLKPNPDSSE IANVPVQNSN PKSSPVDENG RVYRTVATRV  180
SENFTVTNLD QSPNQVAADA TENWPNRDGF NMGSLQSGYG RKNEDDFIED IGNEDTFSSF  240
LDSLLNENVL VYQQRQQLQH QNMFGPSSKL AVSSSQILSH ANIWEAEVSP PMAALGDKGV  300
GGASNSLPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25271297108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G036300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024446880.10.0transcription repressor MYB5
SwissprotQ388501e-78MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A2K1WP060.0A0A2K1WP06_POPTR; Uncharacterized protein
STRINGPOPTR_0019s05200.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38943064
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-78myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]