PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

ERF

Protein Properties

Length: 276aa MW: 30886.6 Da PI: 5.2272

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.019G036100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.7	2.5e-17	35	84	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+ ++ + r +lg+f taeeAa+a+++a+ l+g Potri.019G036100.1 35 KFVGVRQRP-SGRWVAEIKYTTQ---NIRMWLGTFETAEEAARAYDEAACLLRG 84 799****.7**888332...5********************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	4.95E-30	35	91	No hit	No description
SuperFamily	SSF54171	1.57E-18	35	92	IPR016177	DNA-binding domain
PROSITE profile	PS51032	19.177	35	92	IPR001471	AP2/ERF domain
Pfam	PF00847	9.4E-13	35	84	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.7E-26	35	91	IPR001471	AP2/ERF domain
SMART	SM00380	4.5E-33	35	98	IPR001471	AP2/ERF domain
PRINTS	PR00367	9.3E-8	36	47	IPR001471	AP2/ERF domain
PRINTS	PR00367	9.3E-8	58	74	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MEIHFQQEKK RRKASMPVSK TSKFKGISRP SSSNKFVGVR QRPSGRWVAE IKYTTQNIRM 60 WLGTFETAEE AARAYDEAAC LLRGSNTRTN FITRVSLDSP LASRIRNLLN NKRRDKQQQS 120 EEETAEVSTP PTSTIITTSA ITTSCCSSCS SISSCGMSTD SYSNSSSVHE TDILFDDAYK 180 PDLSNLIEEF KWVTSQSDLS WGFGPVFDGF AFSQEVLDFP KSVVSPGTSD LEFSEFDKMK 240 VERQISASLY AMNGVQEYME TIHDPIEALW DLPPL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	8	12	KKRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the symbiotic nodule signaling pathway in response to rhizobial stimulation. Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation, and nodule development. May coordinate these processes (PubMed:28503742, PubMed:28028038, PubMed:28068194). Functions downstream of the CCAMK-CYCLOPS complex (PubMed:28503742, PubMed:28028038). Probably not involved in arbuscular mycorrhizal (AM) symbiosis (PubMed:28068194). {ECO:0000269\|PubMed:28028038, ECO:0000269\|PubMed:28068194, ECO:0000269\|PubMed:28503742}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.019G036100.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in nodules 7 days after rhizobial inoculation. {ECO:0000269\|PubMed:28028038, ECO:0000269\|PubMed:28503742}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002325844.2	0.0	ethylene-responsive transcription factor RAP2-11
Swissprot	A0A1X9PY88	1e-103	ERN1_LOTJA; Ethylene-responsive transcription factor ERN1
TrEMBL	B9IPR2	0.0	B9IPR2_POPTR; Uncharacterized protein
STRING	POPTR_0019s05170.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3341	30	69
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19790.1	2e-25	related to AP2 11

Link Out ? help Back to Top
Phytozome	Potri.019G036100.1
Entrez Gene	7469885

Publications ? help Back to Top
Yano K, et al. Function and evolution of a Lotus japonicus AP2/ERF family transcription factor that is required for development of infection threads. DNA Res., 2017. 24(2): p. 193-203 [PMID:28028038] Kawaharada Y,James EK,Kelly S,Sandal N,Stougaard J The Ethylene Responsive Factor Required for Nodulation 1 (ERN1) Transcription Factor Is Required for Infection-Thread Formation in Lotus japonicus. Mol. Plant Microbe Interact., 2017. 30(3): p. 194-204 [PMID:28068194] Cerri MR, et al. The ERN1 transcription factor gene is a target of the CCaMK/CYCLOPS complex and controls rhizobial infection in Lotus japonicus. New Phytol., 2017. 215(1): p. 323-337 [PMID:28503742]