PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G018400.2
Common NamePOPTR_0019s03520g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 1020aa    MW: 114528 Da    PI: 5.0311
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G018400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431e-13853248
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
  Potri.019G018400.2  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                        78*****************************.************986 PP
2Myb_DNA-binding32.71.7e-1060103248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
  Potri.019G018400.2  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
                         68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.9E-18556IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
CDDcd001673.58E-121053No hitNo description
PfamPF139214.7E-131070No hitNo description
SuperFamilySSF466898.63E-2133106IPR009057Homeodomain-like
CDDcd116598.58E-3155106No hitNo description
Gene3DG3DSA:1.10.10.603.3E-1457104IPR009057Homeodomain-like
PROSITE profilePS5129416.44358107IPR017930Myb domain
SMARTSM007171.7E-1258105IPR001005SANT/Myb domain
PfamPF118313.4E-59407656IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1020 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD DNYDPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TKGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDNRHR KRKRKGIDYN SEIPFEKRPP PGFYDVADED RPVEQPKFPT  240
TIEELEGKKR MDIEAQLRKQ DMAKNKIAER QDAPSAILQA NKLNDPETVR KRSKLMLPAP  300
QISDHELEDI AKMGYASDLL AGSEELTEGS GATRALLANY AQTPRQGMTP LRTPQRTPAG  360
KGDAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP KKREIQTPNP MLTPSATPGG  420
VALTPRIGMT PSRDSFGMTP KGTPIRDELH INEDMDMHDS AKLEQRRQAD LRRNLISGLG  480
NLPQPKNEYQ IVIQPPPEEN EEPEEKIEED MSDRIARAKA EEEARQQALL RKRSKVLQRE  540
LPRPPAASLE LIRDSLLRAD GDKSSFVPPT SIEQADEMIR KELLALLEHD NAKYPLEEKP  600
SKEKKKGSKH PSNRSSASIP VIEDFEEDEL KQADNLIKVE AQYIRVAMGH EDESLDEFIE  660
AHKTCINDLM YFPTRNAYGL SSVAGNMEKL TALQNEFENV KTRLEAEREK ALRLEKKVNV  720
LTQGYQMRAE RQLLPPIELT LKQMDTSGTE LECFQALQRQ EQLAASHRIN GLWEEVQKQK  780
ELEQTMQRRY GDLVAELERI QQLIINYRAL AIQQEEIAAK NRALELAEAA TKQAAILNSE  840
PFEPVTPDEH GNSMPVGSFD KKVLEQQMDV DSEKVHSALA TDTSLTNNVP SDEGQMTLVQ  900
GNGHEASGAN PSSPDGNNQN GVPVLTENSI NRGDIISTVG VAVEIKVNDA SVDGDAGDVM  960
STEIMDGLAS VEGESIQERA DDFDKADMME VSSGGDDKVN QKKDEGKLPV IYVDLTNSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.028013799Cell division cycle 5-like protein
5xjc_L0.028013799Cell division cycle 5-like protein
5yzg_L0.028013799Cell division cycle 5-like protein
5z56_L0.028013799Cell division cycle 5-like protein
5z57_L0.028013799Cell division cycle 5-like protein
5z58_L0.028013799Cell division cycle 5-like protein
6ff4_L0.028013799Cell division cycle 5-like protein
6ff7_L0.028013799Cell division cycle 5-like protein
6icz_L0.028013799Cell division cycle 5-like protein
6id0_L0.028013799Cell division cycle 5-like protein
6id1_L0.028013799Cell division cycle 5-like protein
6qdv_O0.028013799Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185204KRRELKAAGIDNRHRKRKRK
2199204RKRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.52660.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed extensively in shoot and root meristems. {ECO:0000269|PubMed:8917598}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G018400.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325806.20.0cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLB9IPH80.0B9IPH8_POPTR; Uncharacterized protein
STRINGPOPTR_0019s03520.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]