 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.019G010200.1 |
| Common Name | POPTR_0019s02650g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
Trihelix |
| Protein Properties |
Length: 497aa MW: 56887.8 Da PI: 5.022 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.019G010200.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 90.5 | 1.8e-28 | 42 | 125 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
rW+kqe+laL+e+r++m+ ++r++ k+plWeevs+k+ e g++rs+k+Ckek+en+ k+++++k ++++r ++ +t+++f+ql+
Potri.019G010200.1 42 RWPKQETLALLEIRSDMDVAFRDSVVKAPLWEEVSRKLNELGYNRSAKKCKEKFENIYKYHRRTKGSQSGR--PNGKTYRFFEQLQ 125
8********************************************************************97..55568******98 PP
|
| 2 | trihelix | 104.7 | 6.8e-33 | 333 | 418 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW+k+e+ Li++r+++e +++++ k+plWee+s m+ g+ rs+k+Ckekwen+nk++k++k+++kkr +++s+tcpyf+ql+a
Potri.019G010200.1 333 RWPKEEIESLIKIRTYLEFQYQENGPKGPLWEEISTSMKNLGYDRSAKRCKEKWENMNKYFKRVKDSNKKR-PGDSKTCPYFQQLDA 418
8*********************************************************************8.9************85 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 497 aa
Download sequence Send
to blast |
MEASTTFLEN SSAAAGDWED EEGDEGMRVQ AEEGVQCSTA NRWPKQETLA LLEIRSDMDV 60
AFRDSVVKAP LWEEVSRKLN ELGYNRSAKK CKEKFENIYK YHRRTKGSQS GRPNGKTYRF 120
FEQLQALDKT NALVSPTSSD KDHCLMPSAS VIPVSFIPND VPCSVQSPRM NCTDATSTST 180
ASTSSEESEG TRKKKRRLTD FFERLMKEVI EKQENLQNKF LEAIEKCEQE RIAREEVWKM 240
QELDRIKREQ ELLVHERAIA AAKDAAVLAF LQKFSEQGIP VQLPDNPTVP MKFPDNQTSP 300
ALLSKNQAVP VENVVKTHEN SSVESFVNMS SSRWPKEEIE SLIKIRTYLE FQYQENGPKG 360
PLWEEISTSM KNLGYDRSAK RCKEKWENMN KYFKRVKDSN KKRPGDSKTC PYFQQLDALY 420
REKTRRVDNP SYELKPEELL MHMMGGQEDQ QLPDSATTED RESENVDQIQ VDYRGKEDGD 480
GYGIVAIDPS SLEIME*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 192 | 196 | KKKRR |
| 2 | 192 | 197 | KKKRRL |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC211306 | 0.0 | AC211306.1 Populus trichocarpa clone POP004-K18, complete sequence. |
