 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.019G006600.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
Trihelix |
| Protein Properties |
Length: 194aa MW: 21538.4 Da PI: 4.6658 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.019G006600.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 59 | 1.2e-18 | 42 | 93 | 1 | 52 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCke 52
rW+kqe+laL+e+r++m+ ++r++ k+plWeevs+k+ e g++rs+k+C+e
Potri.019G006600.1 42 RWPKQETLALLEIRSDMDVAFRDSVVKAPLWEEVSRKLNELGYNRSAKKCQE 93
8*************************************************87 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| CDD | cd12203 | 3.00E-19 | 41 | 93 | No hit | No description |
| Pfam | PF13837 | 8.9E-11 | 41 | 93 | No hit | No description |
| Sequence ? help Back to Top |
| Protein Sequence Length: 194 aa
Download sequence Send
to blast |
MEASTTFLEN SSAAAGDWED EEGDEGMRVQ AEEGVQCSTA NRWPKQETLA LLEIRSDMDV 60
AFRDSVVKAP LWEEVSRKLN ELGYNRSAKK CQENKGIVAI DPSSMEIMES LDNEFLSTAK 120
LSLPYSEMPP ILKLGRKMLS TSVPQARHLC VTFLILESFT AANWCCRGDH GREKWTLLLK 180
GVCEGQSSDS AKR*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC211306 | 1e-126 | AC211306.1 Populus trichocarpa clone POP004-K18, complete sequence. |
