PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

SBP

Protein Properties

Length: 473aa MW: 51720.6 Da PI: 8.3244

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.018G149900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.6	2.8e-41	171	248	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dl++ak+yhrrh++Ce+hsk+p+v+v+g+e+rfCqqCsrfhelsefD++krsCrrrL++hn+rrr++q+ Potri.018G149900.1 171 RCQVEGCNLDLKSAKDYHRRHRICEKHSKSPKVIVAGMERRFCQQCSRFHELSEFDDKKRSCRRRLSDHNARRRRPQP 248 6**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.3E-35	165	233	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	33.018	169	246	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.16E-39	170	251	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.1E-32	172	245	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0048653	Biological Process	anther development
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MDWNSTASEG NWENIAGLSA KASDIPKQVP LAYHETEGDG AIDKAITYSS GGGLSSSDLW 60 HCSSSKSSVS PSVDSSLKGG IKTYSTADGF PGVIIRKDLT RVESTENIPS LGASASSGEP 120 VIGLKLGKRM YFEDICTTST AKSSSSSIVS TSCTATTKRS RASYPSTQSP RCQVEGCNLD 180 LKSAKDYHRR HRICEKHSKS PKVIVAGMER RFCQQCSRFH ELSEFDDKKR SCRRRLSDHN 240 ARRRRPQPEA IRFNSARPSS SPSSFYGCHF NFKDGRQQMN VVLNRVPFLA GNSTWQSECG 300 FKVTHAGDFF IRPAKAGGIH RQLSYPCNEV PDAASTIPTD SDKIISFERS TPQVFSQGFE 360 GSALTSNIEV APDLRRALSL LSTTSWGSNE HGSTSLDQLM LANQTSMTQP MINAELQNCP 420 VASSENARME QASLESRVHS LDLHDNGNVQ LQEFQLLKAP YATGCFYSNQ FS*

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MDWNSTASEG NWENIAGLSA KASDIPKQVP LAYHETEGDG AIDKAITYSS GGGLSSSDLW  60
HCSSSKSSVS PSVDSSLKGG IKTYSTADGF PGVIIRKDLT RVESTENIPS LGASASSGEP  120
VIGLKLGKRM YFEDICTTST AKSSSSSIVS TSCTATTKRS RASYPSTQSP RCQVEGCNLD  180
LKSAKDYHRR HRICEKHSKS PKVIVAGMER RFCQQCSRFH ELSEFDDKKR SCRRRLSDHN  240
ARRRRPQPEA IRFNSARPSS SPSSFYGCHF NFKDGRQQMN VVLNRVPFLA GNSTWQSECG  300
FKVTHAGDFF IRPAKAGGIH RQLSYPCNEV PDAASTIPTD SDKIISFERS TPQVFSQGFE  360
GSALTSNIEV APDLRRALSL LSTTSWGSNE HGSTSLDQLM LANQTSMTQP MINAELQNCP  420
VASSENARME QASLESRVHS LDLHDNGNVQ LQEFQLLKAP YATGCFYSNQ FS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-27	172	245	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	227	244	KKRSCRRRLSDHNARRRR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269\|PubMed:16861571}.

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.018G149900.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006372254.1	0.0	squamosa promoter-binding-like protein 12 isoform X1
Refseq	XP_006372255.1	0.0	squamosa promoter-binding-like protein 12 isoform X1
Refseq	XP_024446068.1	0.0	squamosa promoter-binding-like protein 12 isoform X1
Refseq	XP_024446069.1	0.0	squamosa promoter-binding-like protein 12 isoform X1
Swissprot	Q5Z818	2e-81	SPL12_ORYSJ; Squamosa promoter-binding-like protein 12
TrEMBL	A0A2K1X131	0.0	A0A2K1X131_POPTR; Uncharacterized protein
TrEMBL	A0A385JIS5	0.0	A0A385JIS5_POPTO; Squamosa promoter binding protein-like 2
STRING	POPTR_0018s14680.2	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4630	30	58
Representative plant	OGRP97	17	230

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.3	2e-53	squamosa promoter binding protein-like 2

Link Out ? help Back to Top
Phytozome	Potri.018G149900.1
Entrez Gene	18107887

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu Q, et al. The alteration in the architecture of a T-DNA insertion rice mutant osmtd1 is caused by up-regulation of MicroRNA156f. J Integr Plant Biol, 2015. 57(10): p. 819-29 [PMID:25677853]