PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G145800.3
Common NamePOPTR_0018s14300g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 1101aa    MW: 122113 Da    PI: 6.841
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G145800.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.74.5e-23130231199
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+k+lt sd++++g +++p++ ae+       +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F+  
  Potri.018G145800.3 130 FCKTLTASDTSTHGGFSVPRRAAEKTfppldfSMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFM-- 217
                         99*********************999*****9445444.38************************************************.. PP

                         SSSEE..EEEEE-S CS
                  B3  86 grsefelvvkvfrk 99 
                         ++++++l+++++r+
  Potri.018G145800.3 218 RDEKQQLLLGIRRA 231
                         5688889****997 PP
2Auxin_resp115.93.5e-38256339183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+++s+F+v+YnPras+seFv++++k+ ka++ +++s+GmRf+m+fete+s +rr +Gt++g+sdld vrW+nS+Wr+L+
  Potri.018G145800.3 256 AAHAAANNSPFTVYYNPRASPSEFVIPLAKYYKAVYsNQISLGMRFRMMFETEESGTRRHMGTITGISDLDAVRWKNSQWRNLQ 339
                         79********************************9989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.62E-43119259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-41121245IPR015300DNA-binding pseudobarrel domain
CDDcd100171.68E-18129221No hitNo description
PROSITE profilePS5086312.125130232IPR003340B3 DNA binding domain
PfamPF023625.1E-21130231IPR003340B3 DNA binding domain
SMARTSM010191.1E-22130232IPR003340B3 DNA binding domain
PfamPF065076.0E-34256339IPR010525Auxin response factor
PROSITE profilePS5174521.91810011081IPR000270PB1 domain
SuperFamilySSF542777.19E-510141071No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1101 aa     Download sequence    Send to blast
MKSPANGAAA AVTNGEGVEK KSINPELWQA CAGPLVNLPA AGTHVVYFPQ GHSEQVAASL  60
KKDVNAQIPN YPNLPSKLLC LLHNVTLHAD PETDEVYVQM TLQPVSSFDK DALLRSDLAL  120
KSNKPQTEFF CKTLTASDTS THGGFSVPRR AAEKTFPPLD FSMQPPAQEL VARDLHDNVW  180
TFRHIYRGQP KRHLLTTGWS LFVSGKRLFA GDSVLFMRDE KQQLLLGIRR ANRQPTNLSS  240
SVLSSDSMHI GILAAAAHAA ANNSPFTVYY NPRASPSEFV IPLAKYYKAV YSNQISLGMR  300
FRMMFETEES GTRRHMGTIT GISDLDAVRW KNSQWRNLQV GWDESTAGER RNRVSIWEIE  360
PVTAPFFICP PPFFRSKHPR QPGMPDDDST DFDSLFKRTM PWLGDDIYMK DPQVLPGLSL  420
AQRMNMQQNP SLANSMQPNY MQSLSGSVLQ NLPGGDLSRQ LGLSSPQMPQ PNNLQFNAQR  480
LPQQAQQLDQ LPKLQSLLNP LGSIIQSQQQ MGDITQQSRQ NMMAQTLPSS QVQAQLLQPQ  540
TLAQTNNILQ QQPSIQSHQL LRNLPQTLHQ QQQNQQQHIM GQNQQQSLMQ SQLSDQVNQH  600
MQMSDNQIQS QLMQKLQQQQ QSVSAQQSAM HQAGQLGQLQ DSQRQLLDAS QSFSRSMTPS  660
QMLEIPQTTP TSLPQPNTIP QQMTKNNNQT NTRFSHLPQQ LKPQQQHSGI MLLSEMAGHM  720
GLPPSSMANQ LSTAGSSILT AAAGPGQSGI TDDVPSCSTS PSTNNCPNIV QPMINGWAHR  780
STAMGEDMAQ SAVTLFSPSA LETVSSNGNL VKDLLQKSEV KPSLNISKNQ NPGLFSSQTY  840
LNGVAAQIDY LDTSSSTTSV CLSQNDVHLQ QNNNSLSYNP QSVLLRDASH DGELQGDPRN  900
NILYGTNIDS QLVMPINSDH LLTKGMMGLG KDFSNNFSSG GMLTNCENSK DPQQELSSAI  960
VSKSFGVPDM PFNSIDSTIN DSSLLNRGSW APPQQQFQRM RTYTKVYKRG AVGRSIDITR  1020
YSGYDELKQD LARRFGIEGQ LEDQQRIGWK LVYTDHENDV LLVGDDPWEV CELCPLHQDP  1080
VSSRSPTDEL GWRFWQLCPS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1671736045388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G145800.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006372205.10.0auxin response factor 19
TrEMBLB9N8470.0B9N847_POPTR; Auxin response factor
STRINGPOPTR_0018s14300.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19