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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.018G141600.1 | ||||||||
Common Name | POPTR_0018s13840g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 217aa MW: 24906.2 Da PI: 4.9492 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.1 | 7.4e-14 | 55 | 99 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er+RR+++N+++ Lre +P + Kl+Ka+i + A++YI++Lq Potri.018G141600.1 55 TVSERNRRKKLNDKLYALREAVPRiS------KLDKASIIKDAIDYIQDLQ 99 568*********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.101 | 49 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.76E-13 | 52 | 102 | No hit | No description |
SuperFamily | SSF47459 | 1.15E-17 | 52 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-11 | 55 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-15 | 55 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.6E-18 | 55 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MESFQNISEY QNYWEMPSMF WNDELTSWEM DQASSQIYDS SSPDGAASAS ASRNTVSERN 60 RRKKLNDKLY ALREAVPRIS KLDKASIIKD AIDYIQDLQE QETRLQAEIM ELESERSEKD 120 KGYEFESELP VLLTSKKTRY DHISDHREPR SDPIEVHQLR VSSMGEKTLF VSLTCSKARE 180 AMVRICEVFE SLKLKIITAS VTTVSGMVKK TVLIEM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 52 | 61 | RNTVSERNRR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.018G141600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF144513 | 0.0 | EF144513.1 Populus trichocarpa clone PX0019_O05 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006372183.1 | 1e-159 | transcription factor bHLH35 isoform X2 | ||||
Swissprot | Q2HIV9 | 8e-64 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | U5FGC4 | 1e-157 | U5FGC4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s13830.1 | 1e-138 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3389 | 33 | 69 |
Representative plant | OGRP2753 | 13 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.3 | 5e-57 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.018G141600.1 |
Entrez Gene | 7490493 |