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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.018G111300.1 |
Common Name | POPTR_0018s11960g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
ARR-B |
Protein Properties |
Length: 708aa MW: 77521.5 Da PI: 5.6358 |
Description |
ARR-B family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.018G111300.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | G2-like | 89.9 | 2.3e-28 | 207 | 260 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++Fv+av+qL G +kA+Pk+il+lm+v+gLt+e+v+SHLQk+Rl
Potri.018G111300.1 207 KPRVVWSVELHQKFVSAVNQL-GLDKAVPKKILDLMNVDGLTRENVASHLQKFRL 260
79*******************.********************************8 PP
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2 | Response_reg | 86.5 | 7.5e-29 | 23 | 131 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89
vl vdD+p+ +++l+++l+k +y ev+++ ++ ale+l+e++ +Dl++ D++mp+mdG++ll+ e++lp+i++++hg++e + +
Potri.018G111300.1 23 VLAVDDDPICLKVLENLLRKCQY-EVTTTNQAVTALEMLRENRnkYDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSSHGDKEFVFKG 111
799********************.***************999889*******************87754.558****************** PP
HHTTESEEEESS--HHHHHH CS
Response_reg 90 lkaGakdflsKpfdpeelvk 109
+ Ga d+l Kp+ eel +
Potri.018G111300.1 112 ITHGAVDYLLKPVRLEELKN 131
*****************986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0000160 | Biological Process | phosphorelay signal transduction system |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 708 aa
Download sequence Send
to blast |
MTVEDQRGCN SVNEKMFPVG MRVLAVDDDP ICLKVLENLL RKCQYEVTTT NQAVTALEML 60 RENRNKYDLV ISDVNMPDMD GFKLLELVGL EMDLPVIMLS SHGDKEFVFK GITHGAVDYL 120 LKPVRLEELK NIWQHVIRRK KWYPQDQNGS PDQDKGGDGA GEGEQVTSTG SADQNGKVNR 180 KRKDQDEEEE GEGEDGNDNE ESGNQKKPRV VWSVELHQKF VSAVNQLGLD KAVPKKILDL 240 MNVDGLTREN VASHLQKFRL YLKRLSCGAN QQPNMVAAFG AKDSSYLRMG SLDGFGDFRS 300 VHGPGQLSTT SLSSYPPGSL LGRLNSPGGL TLQGIASPGL LQPGHSRSLN NPLNTLGKLQ 360 PGLLQTNRGS TNLFQGISSA LDPKQFQLKS MNHTGDFNHK GDATSFTLAG CFPDVKVTIG 420 SLGNTISSAA NNPQMLHVNP QQNQTRRSLA TQSSLSMPSL NQESFDVGVR GSSNFLDHSR 480 CDDNWQGVVQ MSTFPSNSLP LGEPFRHDPL PTSTRRDNIS STTSHIVNNP LDFSSSGSLT 540 APLEDSRLDM QGQADLVGNI FHNTNYTSKN RWGENSQNFN PCLNGSFGAM NSLVSGNGSM 600 NPLSQSMDQR KRFDASVLGQ SNSGTLSMFQ HLEAGNSALD PTGMRIPKMR SNEDFLLEQT 660 KSPNGFVQNN YDSLDDIVNA MIKRDQNDGV LMDGEFGFES YSPGSCI*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | FN908142 | 0.0 | FN908142.1 Populus x canadensis mRNA for putative B-type response regulator 19 (rr19 gene), cultivar Dorskamp. |