PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G109500.1
Common NamePOPTR_0018s11800g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 456aa    MW: 47865.2 Da    PI: 6.177
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G109500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.3e-12252297555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Potri.018G109500.1 252 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 297
                         99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.27E-13245301No hitNo description
SuperFamilySSF474595.5E-17245307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16249306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9252297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MQPCSREMQG INSLLNPSSQ IPLQDLQNQQ NPSQIQNSHF DPNSSSNDDF LEQMLSNIPP  60
CSWPDLKSPW DLTMPINNND SSNSIAKPRD LSDETAPSNT DNSNLGFHNN FDESVILASK  120
LRQHQISGGG GAAAAAKMML QQQLLMAAAR GVLPQNDVID GSSFKGGDGS MQGLFNGFGA  180
GSMNGTGQAS NQSMQHFNHP QGGAMQAQNF GAQGAATTAV MNQPQASGSN GGAPAQPRQR  240
VRARRGQATD PHSIAERLRR ERIAERMKAL QELVPNANKT DKASMLDEII DYVKFLQLQV  300
KVLSMSRLGG AAAVAPLVAD MSSEAGGDCI QASADGGSLS RTSNGNQTAR TNDSSLTVTE  360
HQVAKLMEED MGSAMQYLQG KGLCLMPISL ATAISTATCH NRSPAINNNH HALLQSNGEG  420
PASPSMSVLT VQSATMGNVG GDGGAVKDAA SVSKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256261RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.157180.0leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G109500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1479390.0EF147939.1 Populus trichocarpa clone WS0126_B22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325140.20.0transcription factor bHLH66
SwissprotQ9ZUG94e-88BH066_ARATH; Transcription factor bHLH66
TrEMBLB9IMF50.0B9IMF5_POPTR; Uncharacterized protein
STRINGPOPTR_0018s11800.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47783352
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.13e-59LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]