PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

ERF

Protein Properties

Length: 294aa MW: 31556.4 Da PI: 4.684

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.018G085700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.2	8.5e-18	69	119	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g Potri.018G085700.1 69 PVFRGVRMRT-WGKWVSEIREPRK---KNRIWLGTFSTPEMAARAHDVAALSIKG 119 579**998.******854...59********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	8.7E-12	69	119	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.19E-21	70	127	IPR016177	DNA-binding domain
PROSITE profile	PS51032	22.629	70	127	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.8E-31	70	128	IPR001471	AP2/ERF domain
SMART	SM00380	1.2E-34	70	133	IPR001471	AP2/ERF domain
CDD	cd00018	1.69E-30	71	127	No hit	No description
PRINTS	PR00367	1.7E-9	71	82	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.7E-9	93	109	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MTVSPVSNSN SDTDSTSTYS SSLQALSSSS SSGLSPNPVS KPDPEENPRK PKRPRESTST 60 SSNSNSKHPV FRGVRMRTWG KWVSEIREPR KKNRIWLGTF STPEMAARAH DVAALSIKGN 120 SAILNFPKLA GSLPRPASNS PRDVQAAAAK AASMDFNIVP SAPTKVCDDE NNSNSNDSTA 180 SNNNRSSSSL VTQSSSSPSS SSTAEVTSSP SDVATPEELS EIVELPSLET NLEEFPEFVL 240 LGDSWPYNIN QSWYCEDYGA VGTGYFSDQY LSIIPESNVI TTTGAFETSL WEH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	6e-19	65	127	9	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.018G085700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF151462	0.0	EF151462.1 Populus trichocarpa TINY-like protein 2 (TINYL2) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002324441.2	0.0	ethylene-responsive transcription factor ERF043
Swissprot	Q9M080	7e-51	ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBL	B9ILS4	0.0	B9ILS4_POPTR; Uncharacterized protein
STRING	POPTR_0018s09270.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF192	34	263
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	1e-47	ERF family protein

Link Out ? help Back to Top
Phytozome	Potri.018G085700.1
Entrez Gene	7458787

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]