PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.018G083700.4 | ||||||||
Common Name | POPTR_0018s09060g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 248aa MW: 26437.4 Da PI: 6.8895 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.5 | 0.00028 | 113 | 151 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Potri.018G083700.4 113 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 151 6678889999999999998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.585 | 101 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.31E-6 | 111 | 155 | No hit | No description |
SuperFamily | SSF47459 | 2.88E-10 | 111 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-7 | 115 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 248 aa Download sequence Send to blast |
MENWEEQVLH QASSASVMDV KQENSASNYV YGANEDFQAA AKPTACSQVI PASSPKSCVT 60 SFSSNMLDFS TSKGDGRHPP PDRSSDCNST ANGGAVKKAR VQSSSAQPTF KVRKEKLGDR 120 ITALHQLVSP FGKTDTASVL LEAIGYIRFL QSQIEALSLP YLGSGSTNMR QQQSVQGESN 180 CIFPEDPGQL LNDSCIKRKG ASQQDSHGEP KDLRSRGLCL VPVSCTLQVG SDNGADYWAP 240 ALGGGFR* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pth.4711 | 0.0 | leaf| stem |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.018G083700.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF146381 | 0.0 | EF146381.1 Populus trichocarpa clone WS0117_M02 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002325008.2 | 0.0 | transcription factor bHLH68 | ||||
Swissprot | Q8S3D1 | 3e-91 | BH068_ARATH; Transcription factor bHLH68 | ||||
TrEMBL | B9ILQ2 | 0.0 | B9ILQ2_POPTR; BHLH family protein | ||||
STRING | POPTR_0018s09060.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G29100.1 | 1e-93 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.018G083700.4 |
Entrez Gene | 7488103 |
Publications ? help Back to Top | |||
---|---|---|---|
|