PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G083000.1
Common NamePOPTR_0018s08960g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CPP
Protein Properties Length: 605aa    MW: 65604.6 Da    PI: 7.9262
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G083000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR444.5e-14123162242
                 TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                         ++++CnCk+s+Clk+YCeCfa+g++C+  C+C +C N+ e+
  Potri.018G083000.1 123 KQRQCNCKHSRCLKLYCECFASGTYCDG-CNCVNCYNNVEN 162
                         789*************************.********9875 PP
2TCR50.93.2e-16207246140
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                         k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Potri.018G083000.1 207 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 246
                         589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.4E-15122162IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.442123247IPR005172CRC domain
PfamPF036388.3E-11125159IPR005172CRC domain
SMARTSM011148.4E-20207248IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-12210245IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MGESEGSEFP PKKQQQQSEN AYFQTKKLAR QLDFTQGVLP DHPQSQPSPL QKPPLLVSPA  60
AAQSQPQPHP QSQLQLQPQV AEIQVVPQQQ TQQQQQPARA VKPESPKSIP IPNTELKDGT  120
PKKQRQCNCK HSRCLKLYCE CFASGTYCDG CNCVNCYNNV ENEAARREAV EATLERNPNA  180
FRPKIASSPH GTRDSREETG DGLVFVKHNK GCHCKKSGCL KKYCECFQAN ILCSENCKCM  240
DCKNFEGSEE RQALFHGDHG NNMAYIQQAA NAAITGAIGS SGYASPPVSR KRKGQELFFG  300
HTVKDQSFDR LGHFQQGSHT RPPAPSSSLP SNPIARAGNA ITLGPSKITY RSLLADIIQP  360
QDLKELCSVL VVLSGEAAKT FSDQRNSMEK RVEDQRETLL ASSTQERLQS HKESDADKIV  420
ANDCSSANHA DKVGPDDSSS DGADMPKGRP MSPGTLELMC DEQDTMLMAA ASPSGLMGHG  480
CNTSSQLPCG QGMAEAHAEQ ERIVLTKFRD CLNRLITFGE IKETKCSSLA RTELGNQKDP  540
LSNGIANTRT GTGSQRGPFS NGVVKVVPPT AKPTQMVTSI VSTSGSDLQK IPGLPQNGDN  600
KLKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-321152562132Protein lin-54 homolog
5fd3_B5e-321152562132Protein lin-54 homolog
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G083000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166730.0AC216673.1 Populus trichocarpa clone POP019-C15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024446433.10.0protein tesmin/TSO1-like CXC 5
RefseqXP_024446434.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2K1WXT60.0A0A2K1WXT6_POPTR; Uncharacterized protein
STRINGXP_002514278.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Representative plantOGRP14691745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.10.0Tesmin/TSO1-like CXC domain-containing protein