 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Potri.018G064700.1 |
Common Name | POPTR_0018s07220g |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
Family |
NF-YA |
Protein Properties |
Length: 338aa MW: 37361.8 Da PI: 8.8662 |
Description |
NF-YA family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.018G064700.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | CBFB_NFYA | 100.2 | 2.1e-31 | 181 | 237 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
d p+YVNaKQy++I++RRq+Rakle+++kl k+rkpylheSRh hAl+R RgsgGrF
Potri.018G064700.1 181 DGPIYVNAKQYRGIIRRRQSRAKLEAQNKL-VKNRKPYLHESRHIHALNRVRGSGGRF 237
57****************************.**************************9 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0016602 | Cellular Component | CCAAT-binding factor complex |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 338 aa
Download sequence Send
to blast |
MALRIQNLLK KNFDEPYFTV SCPSWWNSNE QQFLPSLSKN TSFKVDSPNQ PYHESKQLGF 60 HLLDQESSST LSIGQSHNEM SSVGGINSQD QCIPSESDES CGKGVKGKMK PVLLLSTPDS 120 MSNHSQADCS YSMVRAPYAD PYFGGLCNPY ELHAFIQPHL GSHMVGMTAG RVPLPVDLAD 180 DGPIYVNAKQ YRGIIRRRQS RAKLEAQNKL VKNRKPYLHE SRHIHALNRV RGSGGRFLSK 240 KKLQESDPTP SQCNVTDTIH SHVKNDASEL ESYQSGTGQS GASNTTCSDI TSVSYSNVTF 300 RQPERRFSGI ATRLGGGMEI NSRLICRGTQ HHTSVVQ*
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AC214630 | 0.0 | AC214630.1 Populus trichocarpa clone POP062-E04, complete sequence. |