PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G058800.1
Common NamePOPTR_0018s04710g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 323aa    MW: 35188 Da    PI: 6.8802
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G058800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.91.2e-081061282246
                         T-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  22 gtWktIartmgkgRtlkqcksrwqk 46 
                         + W++Ia+ ++ gRt++++k++w++
  Potri.018G058800.1 106 R-WSLIASQLP-GRTDNDVKNYWNT 128
                         4.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.779130IPR017877Myb-like domain
SMARTSM007172.7E-913132IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-211532IPR009057Homeodomain-like
SuperFamilySSF466893.07E-8103139IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-21103140IPR009057Homeodomain-like
PfamPF002491.5E-6105128IPR001005SANT/Myb domain
CDDcd001671.99E-6106130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDATLKSYLE THRGTGGNWI ALPQKAALAH ISGKKKAFPV  60
LISLLEPVYC GCVRKVDYGL TPSCIVVILV LARFQGITRI FVHYSRWSLI ASQLPGRTDN  120
DVKNYWNTKL KRKILAGKIN ISIRNKSIDA PTSIANILTS PVLYGPKAET ESTITISDYS  180
LTQSSGTLPT LSDIGYGPFI NCTRQNLSAD QFQFSNFPGV MDMSEFGATS MNSSHIVSPS  240
QECSSISDSS SLALDNKGIP LPRNGGLEGA GMLMDSEFDL PSDFFNGLLF QDEASEAATN  300
CYQYFADFGY VDMKPQGLTN QY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G058800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024445863.10.0transcription factor MYB87
TrEMBLA0A2K1WWJ40.0A0A2K1WWJ4_POPTR; Uncharacterized protein
STRINGPOPTR_0018s04710.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.15e-38myb domain protein 84