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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.018G058600.1 | ||||||||
Common Name | POPTR_0018s04720g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C3H | ||||||||
Protein Properties | Length: 385aa MW: 42183.3 Da PI: 7.3287 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.2 | 1.2e-07 | 125 | 145 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G Ck Gd+C FaHg Potri.018G058600.1 125 ACPEFRK-GGCKKGDSCEFAHG 145 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 7.9E-5 | 120 | 146 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.634 | 121 | 147 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-5 | 125 | 145 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-4 | 125 | 147 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.042 | 155 | 179 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 11 | 155 | 178 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MMIGEHPHHH PNPTVQIPQW DPYDDQTTSP SPSTIPSSPF TNFNALDSLT ALHRYLPSNE 60 PDPSFEDELD LPVDAFSCDH FRMYVFKVRR CGRGRSHDWT ECPYAHPGEK ARRRDPQRYH 120 YSGTACPEFR KGGCKKGDSC EFAHGVFECW LHPARYRTQP CKDGPACRRR VCFFAHTPEQ 180 LRLLPQHSPK GNGSGSWELD FGSLVMHPLD SYLTKAGSFV SSPTSILTSP PVSPPSDSPP 240 MSPVSPQVIG GSGSGSFNSM SELLASMRGL QLGKMKIGSP VGSWGVQSGS RFGSPRGSSL 300 RPGFCSLPST PTRTMATRSG LGQLDIWGDS STCEEEPAME RVESGRDLRA KIYAKLSKEN 360 SLDPDRVESA VSGPDVGWVS ELVK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.3311 | 0.0 | stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.018G058600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF144742 | 0.0 | EF144742.1 Populus trichocarpa clone WS01117_K24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002324748.2 | 0.0 | zinc finger CCCH domain-containing protein 20 | ||||
Refseq | XP_024445958.1 | 0.0 | zinc finger CCCH domain-containing protein 20 | ||||
Swissprot | Q9M0G2 | 1e-119 | C3H49_ARATH; Zinc finger CCCH domain-containing protein 49 | ||||
TrEMBL | B9ING6 | 0.0 | B9ING6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s04720.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2056 | 31 | 76 |
Representative plant | OGRP1170 | 16 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 1e-106 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.018G058600.1 |
Entrez Gene | 7463728 |
Publications ? help Back to Top | |||
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