PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.018G052700.1 | ||||||||
Common Name | POPTR_0018s05240g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | LBD | ||||||||
Protein Properties | Length: 186aa MW: 20480.2 Da PI: 8.3946 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.9 | 8.3e-39 | 5 | 104 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 aCaaC+++rr+C +dC+lap fp+e++k+f+++hklFG++n+++ lk++ +e++++ ++s+vyeA+ar+rdPv+G++g+i++l q+++ +k Potri.018G052700.1 5 ACAACRHQRRRCRPDCPLAPFFPHEKAKDFEAAHKLFGVHNIVNNLKKIIPEQKPESITSMVYEANARVRDPVSGCTGIISRLLQNINAVK 95 7****************************************************************************************** PP DUF260 92 aelallkee 100 +el+ ++++ Potri.018G052700.1 96 VELEFVQAQ 104 ****99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.812 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.4E-37 | 5 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MKPPACAACR HQRRRCRPDC PLAPFFPHEK AKDFEAAHKL FGVHNIVNNL KKIIPEQKPE 60 SITSMVYEAN ARVRDPVSGC TGIISRLLQN INAVKVELEF VQAQVACFHT LQQQLGDQNV 120 VDNNPQQLQE SSFAQETKLF DGVHQGISLS IGQPAVKPER RSSSSPSSSK AHGKQPLQDV 180 SDDGF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-24 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-24 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.018G052700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024445368.1 | 1e-117 | protein LATERAL ORGAN BOUNDARIES | ||||
TrEMBL | A0A3N7HWH5 | 1e-116 | A0A3N7HWH5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s05240.1 | 1e-134 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF28264 | 3 | 3 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 2e-21 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Potri.018G052700.1 |
Entrez Gene | 7463754 |