PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.018G052200.1

Common Name

POPTR_0018s05280g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 520aa MW: 56705.5 Da PI: 8.9776

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.018G052200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.6	2.5e-06	72	94	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F+r nL+ H r H Potri.018G052200.1 72 FICEICNKGFKRDQNLQLHRRGH 94 89*******************88 PP
2	zf-C2H2	12.5	0.00044	148	170	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + Potri.018G052200.1 148 WKCEKCSKRYAVQSDWKAHSKIC 170 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	6.2E-6	71	94	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.27E-7	71	94	No hit	No description
Pfam	PF12171	2.0E-5	72	94	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.866	72	94	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.011	72	94	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	74	94	IPR007087	Zinc finger, C2H2
SMART	SM00355	100	113	143	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.5E-5	136	169	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.27E-7	143	168	No hit	No description
SMART	SM00355	130	148	168	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
MDENMSNLTS ASGEVSASSG SRIETGAIYP QHSFDSTNQP PPKKKKSFPG NPDPDAEVIA 60 LSPNSLQATN RFICEICNKG FKRDQNLQLH RRGHNLPWKL KQRTNKEVKK KVYVCPEVTC 120 VHHDPSRALG DLTGIKKHFS RKHGEKKWKC EKCSKRYAVQ SDWKAHSKIC GTREYRCNCG 180 TLFSRRDSFI THRAFCDALA EESVRAITVN PILSSQQPGS SASHLINLQA LSVKREHDQN 240 QHHFNPRPEY SIPPWLVFPP IGDAGTGPPQ INLSSQLFPE NFNQSFLQHG NPSTNPTVLP 300 PFQSASTVSP HMSATALLQK AAQMGVTMSK PSPPAAAAAI LRPHQGHMSN LNPGFSSTLP 360 AVTSGLFLSS REGMGSGFGH GLVSFENKAA AVTSGIMEHL AASDAGGPSL VHDMMSSLSS 420 ASGFDGSSFD NEDFNGMLNP KRDGGNFQEI LSKSTESQFR RSDHDVRTSA VGSPHGGGND 480 DLTRDFLGLK AFPHKDWLDH INPSTYGQRN QNLPPPWQG*

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

MDENMSNLTS ASGEVSASSG SRIETGAIYP QHSFDSTNQP PPKKKKSFPG NPDPDAEVIA  60
LSPNSLQATN RFICEICNKG FKRDQNLQLH RRGHNLPWKL KQRTNKEVKK KVYVCPEVTC  120
VHHDPSRALG DLTGIKKHFS RKHGEKKWKC EKCSKRYAVQ SDWKAHSKIC GTREYRCNCG  180
TLFSRRDSFI THRAFCDALA EESVRAITVN PILSSQQPGS SASHLINLQA LSVKREHDQN  240
QHHFNPRPEY SIPPWLVFPP IGDAGTGPPQ INLSSQLFPE NFNQSFLQHG NPSTNPTVLP  300
PFQSASTVSP HMSATALLQK AAQMGVTMSK PSPPAAAAAI LRPHQGHMSN LNPGFSSTLP  360
AVTSGLFLSS REGMGSGFGH GLVSFENKAA AVTSGIMEHL AASDAGGPSL VHDMMSSLSS  420
ASGFDGSSFD NEDFNGMLNP KRDGGNFQEI LSKSTESQFR RSDHDVRTSA VGSPHGGGND  480
DLTRDFLGLK AFPHKDWLDH INPSTYGQRN QNLPPPWQG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	6e-34	144	205	3	64	Zinc finger protein JACKDAW
5b3h_F	6e-34	144	205	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.018G052200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006371888.1	0.0	protein indeterminate-domain 7
Swissprot	Q8H1F5	1e-117	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A3N7G688	0.0	A0A3N7G688_POPTR; Uncharacterized protein
TrEMBL	U5FFQ4	0.0	U5FFQ4_POPTR; Uncharacterized protein
STRING	POPTR_0018s05280.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275
Representative plant	OGRP95	16	242

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-112	indeterminate(ID)-domain 7

Link Out ? help Back to Top
Phytozome	Potri.018G052200.1
Entrez Gene	18107611

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]