PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G049600.1
Common NamePOPTR_0018s05530g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 297aa    MW: 33296.5 Da    PI: 8.4925
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G049600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41.1e-151461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT+ Ed++l  ++k +G g+W+  +++ g++R++k+c++rw++yl
  Potri.018G049600.1 14 RGAWTALEDKILMAYIKAHGEGNWRNLPERAGLKRCGKSCRLRWLNYL 61
                        89********************************************97 PP
2Myb_DNA-binding50.74.1e-1667111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w++ 
  Potri.018G049600.1  67 RGNISHDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111
                         78999*****************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-23564IPR009057Homeodomain-like
PROSITE profilePS5129415.825961IPR017930Myb domain
SuperFamilySSF466894.21E-2812108IPR009057Homeodomain-like
SMARTSM007171.6E-121363IPR001005SANT/Myb domain
PfamPF002493.1E-141461IPR001005SANT/Myb domain
CDDcd001675.67E-91661No hitNo description
PROSITE profilePS5129424.65362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2365115IPR009057Homeodomain-like
SMARTSM007176.5E-1566114IPR001005SANT/Myb domain
PfamPF002492.7E-1467111IPR001005SANT/Myb domain
CDDcd001679.28E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006633Biological Processfatty acid biosynthetic process
GO:0006970Biological Processresponse to osmotic stress
GO:0010023Biological Processproanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGRSPCCSKE GLNRGAWTAL EDKILMAYIK AHGEGNWRNL PERAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SHDEEELIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT TLGKKAKGQS  120
SSQSKQSSQR KSRAIKPMTS TQPSKSTQTT QVIRTKATRC TKVLLSLQSP PPTRTPLPPP  180
EILSSTAMND PSQASLINHQ QDGPNFHCGT EEVHACHDGS DFFNFGKWNE IQPNDIDGDT  240
LMKSGCNRNL SRGSEYSLGL FDDLMFKDWA LNHCPEDNAT LDLESLAHLL DSEEWP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-231211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G049600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5731520.0FJ573152.1 Populus tremuloides MYB transcription factor R2R3-like protein (MYB086) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006371894.20.0transcription factor MYB8
TrEMBLA0A2K1WW120.0A0A2K1WW12_POPTR; Uncharacterized protein
STRINGPOPTR_0018s05530.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.11e-60myb domain protein 7