PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G039300.1
Common NamePOPTR_0018s00600g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CPP
Protein Properties Length: 682aa    MW: 73599 Da    PI: 8.5411
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G039300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.46.7e-14107146242
                 TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                         + k+CnCk+s Clk+YCeCfaag +C+  C+C +C+N+ e+
  Potri.018G039300.1 107 KPKQCNCKNSMCLKLYCECFAAGIHCNG-CNCLNCRNNVEN 146
                         5699************************.********9875 PP
2TCR47.92.6e-15191230140
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                         k++kgCnCk+s ClkkYCeCf+ + +Cse+CkC +CkN e
  Potri.018G039300.1 191 KHNKGCNCKRSGCLKKYCECFQGNIFCSENCKCLECKNFE 230
                         589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011149.3E-15106146IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.731107231IPR005172CRC domain
PfamPF036383.9E-11109143IPR005172CRC domain
SMARTSM011145.1E-18191232IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.8E-12194229IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MEQSETVTEY TPKKLAPQKL DFTAPICRTA PANVPSQTQQ VQVNLQTQTP PRPEMLPPPY  60
QERPVSQHEA AAAAQRIPHP VHKISAMPRG KQDSPGSRLA NDGTPKKPKQ CNCKNSMCLK  120
LYCECFAAGI HCNGCNCLNC RNNVENEKER KEAVETTLQR NPNAFRPKIA SSPHGSRDTT  180
EDAQEVQMLG KHNKGCNCKR SGCLKKYCEC FQGNIFCSEN CKCLECKNFE GSDERRALFH  240
GSPHATAYAQ QATNAAISGA IGSSGYGTTL ASKKRKSEEL FGIATKDQPA HSTAKFSQGN  300
TLRNSAAFSS PLSVPVSRTA NGAVLGSTKP TYRSPLAGVL KPQFVKEICT LLVAISGKAT  360
EALAGKVGKM DTRSERENIE TYSASPTQEK ESSLKGWNAI EHMPDDCLNG NKAEKDGSID  420
SGDVENARPS SPDIDLMCHE EEMMFMEMGS PIGVARLCQS KTQKPDDGYE CSQLHAEQEK  480
IILTSFLDIL NTVSTYGSIK VCQSGNQKEP AVRDTVKTGI ETVNHRNGYH NRGAATLVLN  540
GDPPNKAASP IQKGLTERST IKAGIQMGNH KAHHSNGTTQ SPVIANLAST VLPIKAASLQ  600
QESVERGTKT ARNDIGNRSG YDNGTVKSLV LAPSASNTDL PVKAASPVEN RKRNPAAFLS  660
LLVEVDVFSP PGIHWNRSAK G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-3210524010132Protein lin-54 homolog
5fd3_B6e-3210524010132Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G039300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024445729.10.0protein tesmin/TSO1-like CXC 6
TrEMBLA0A2K1WVJ10.0A0A2K1WVJ1_POPTR; Uncharacterized protein
STRINGPOPTR_0018s00600.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Representative plantOGRP14691745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.24e-82Tesmin/TSO1-like CXC domain-containing protein