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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.018G022700.1 | ||||||||
Common Name | POPTR_0018s02210g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | TALE | ||||||||
Protein Properties | Length: 427aa MW: 47762.9 Da PI: 6.3098 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.4 | 1e-07 | 363 | 396 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + Potri.018G022700.1 363 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 396 469*****************************87 PP | |||||||
2 | ELK | 28.8 | 2.8e-10 | 317 | 338 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ Potri.018G022700.1 317 ELKHELKQGYKEKIVDIREEIL 338 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.2E-19 | 150 | 194 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.8E-17 | 152 | 193 | IPR005540 | KNOX1 |
SMART | SM01256 | 3.7E-28 | 205 | 260 | IPR005541 | KNOX2 |
Pfam | PF03791 | 7.3E-20 | 211 | 259 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.969 | 317 | 337 | IPR005539 | ELK domain |
SMART | SM01188 | 6.1E-4 | 317 | 338 | IPR005539 | ELK domain |
Pfam | PF03789 | 9.9E-7 | 317 | 338 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.726 | 337 | 400 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-16 | 339 | 402 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.7E-11 | 339 | 404 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.90E-12 | 340 | 401 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-25 | 344 | 401 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.2E-17 | 357 | 396 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MAYHHNLSSQ DLPLHHFTDQ QATENHTAPP NWLNTALLRS QQPPQQQTHH HFTDNNNTNN 60 FLNLHTAATT ATAATSDSNS HNPVQWLSRS SSSLLNRNHS DVIDDVAAGG DHAIITSISQ 120 ESSELKNMNK GEGEAMDSGG GESVVNWQNA RYKADILTHP LYDQLLSAHV ACLRIATPVD 180 QLPRIDAQLA QSQQVVTKYS ALGSHQGLVP DDKELDQFMT HYFLLLCSFK EQLQQHVRVH 240 AMEAVMACWE IEQSLQSLTG VSPGEGTGAT MSDDDEDQVD SDANLFVGSL EGADTLGFGP 300 LVPTESERSL MERVRQELKH ELKQGYKEKI VDIREEILRK RRAGKLPGDT TSVLKAWWQS 360 HSKWPYPTEE DKARLVQETG LQLKQINNWF INQRKRNWHS NPSTSTVLKS KRKRSNAGDN 420 NGDRFV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 393 | 413 | RKRNWHSNPSTSTVLKSKRKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.018G022700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP770020 | 0.0 | KP770020.1 Populus tomentosa TALE transcription factor (Potri.006G259400) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002324890.3 | 0.0 | homeobox protein knotted-1-like 3 isoform X1 | ||||
Swissprot | P48000 | 0.0 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A2K1WUM8 | 0.0 | A0A2K1WUM8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s02210.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1017 | 34 | 108 |
Representative plant | OGRP167 | 17 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.1 | 0.0 | KNOTTED1-like homeobox gene 3 |
Link Out ? help Back to Top | |
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Phytozome | Potri.018G022700.1 |
Entrez Gene | 7458397 |
Publications ? help Back to Top | |||
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