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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Potri.018G005300.1 |
Common Name | POPTR_0018s03770g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
MYB |
Protein Properties |
Length: 392aa MW: 43469.1 Da PI: 5.9374 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.018G005300.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 47.9 | 3.1e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+ Ed+ l d+ k +G g W+ I ++ g++R++k+c++rw +yl
Potri.018G005300.1 14 KGAWTPLEDKMLMDYLKIHGEGKWSNIVKETGLKRCGKSCRLRWMNYL 61
79********************************************97 PP
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2 | Myb_DNA-binding | 53.2 | 6.9e-17 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+++++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++
Potri.018G005300.1 67 RGNFSEDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWHT 110
89********************.*********.***********97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 392 aa
Download sequence Send
to blast |
MGRKPGCSKD GLNKGAWTPL EDKMLMDYLK IHGEGKWSNI VKETGLKRCG KSCRLRWMNY 60 LRPNIKRGNF SEDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWHT TIAKKAQHRQ 120 LRGQPKVDRK QIASGSQNGA ASNLKNQSTI ESQCTTGMVA ATTTLQENTA QDHQDSIAIP 180 KSTNSDLQLD MPKTYENEPS SKGSQNGAAS NFKNQSTIES QCTTGVVAAT PTLQENTAQD 240 HQDSIAMAQS TNSNLQYDIP KTNENESSSK GLASGEDDNS SNIMMYYDYM EDFSKILDSD 300 FTKFSDVHDI ISTDHHSNNT IEVNGDHHGV SINGCKSRET AEFPGKLVES DHWSSNKCIQ 360 ADQGFDFMSL LSFLDSTDDE WTADALGTKV L*
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