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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.017G144600.1 | ||||||||
Common Name | POPTR_0017s01400g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 685aa MW: 75924.4 Da PI: 6.8079 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.5 | 2.6e-19 | 26 | 81 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ +++t +q+ +Le++F+++++p++++r++L+++lgL+ +q+k+WFqNrR++ek Potri.017G144600.1 26 KKAYHRHTCQQILQLEKFFKECPHPNEKQRRQLSRELGLEAKQIKFWFQNRRTQEK 81 6778899***********************************************99 PP | |||||||
2 | START | 124.6 | 1.3e-39 | 195 | 415 | 3 | 206 |
HHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS START 3 aeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.... 77 a a++el+++ ++ep+W ks+ + + ++ + + ++e +++s+ v+m+ ++lv +ld + +W ++ Potri.017G144600.1 195 AAGAMDELIRLLRVNEPFWIKSPsdgrlilDRLSYERIYPRA---AHfiscnARVESSKDSATVTMPGMDLVVMFLDPN-KWVDLFPtivt 281 6679*******************8777444444444433333...22678999**************************.99999988888 PP EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS START 78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161 +a t+ v++ g g lq m+ ++ lsplvp R+f+f+R + ql+ g+wvi+dvS d ++ s++ +a +lpSg++i++++ng Potri.017G144600.1 282 EARTIHVLEAGtvgnrhGSLQMMYEQMHILSPLVPpREFYFLRLCLQLEPGQWVIADVSYDYLKESG-SPP--CAWRLPSGCMIQDMPNGC 369 *************************************************************999965.555..566*************** PP EEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 162 skvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 sk++wvehv+ ++r+ h l+r l+ ++a ga +w a lqr ce+ Potri.017G144600.1 370 SKIIWVEHVEANDRIQtHCLYRDLICGSYAYGAERWIASLQRICER 415 ***************99***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-20 | 13 | 85 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.19E-19 | 15 | 83 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.265 | 23 | 83 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.7E-16 | 25 | 87 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.01E-16 | 26 | 84 | No hit | No description |
Pfam | PF00046 | 7.7E-17 | 26 | 81 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 58 | 81 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 36.904 | 184 | 418 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.83E-27 | 185 | 416 | No hit | No description |
CDD | cd08875 | 2.06E-99 | 189 | 414 | No hit | No description |
SMART | SM00234 | 2.2E-27 | 193 | 415 | IPR002913 | START domain |
Pfam | PF01852 | 1.1E-32 | 196 | 415 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.1E-6 | 288 | 380 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 8.79E-13 | 434 | 647 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 685 aa Download sequence Send to blast |
MELQLGNNGG VSGDEHEAFN SGNKGKKAYH RHTCQQILQL EKFFKECPHP NEKQRRQLSR 60 ELGLEAKQIK FWFQNRRTQE KAQSERSDNS VLRTENERIH CENLSIREAM KNVICPACGG 120 HPFREEERQL NLQKLRQENA RLREEAKELP TFVQNQRMGN PGIDWGRNPG SDISHFACRL 180 EGIPDMENAL MAETAAGAMD ELIRLLRVNE PFWIKSPSDG RLILDRLSYE RIYPRAAHFI 240 SCNARVESSK DSATVTMPGM DLVVMFLDPN KWVDLFPTIV TEARTIHVLE AGTVGNRHGS 300 LQMMYEQMHI LSPLVPPREF YFLRLCLQLE PGQWVIADVS YDYLKESGSP PCAWRLPSGC 360 MIQDMPNGCS KIIWVEHVEA NDRIQTHCLY RDLICGSYAY GAERWIASLQ RICERLAFST 420 AVPPRELGGV VTSPEGRKSI VNLAHRMVKI FCSSLGMSGK LDFRQLSEGN NSGVRVAICK 480 NAEQGQPIGT VASAATSFWL PLSPQNVFNF FKAEKSRTQW DILSNGNPVL EISHISNGAD 540 PGNCISIIRV ISHPFSPILN NMLILQESCT DSSVSMVVYA PVGIPAMNVA ISGDDSSIIP 600 ILPSGFVISG DGRMDTRGTS SSSTSSTGSN SGGSLLTIAF QILVSGSNSS SSTEFNMESV 660 ATVNTLISTT VLKIKSAFNC SDLD* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During embryo development, expressed in all cells at the 4- and 16-cell embryo stages. Expression is restricted to the protoderm from the globular stage onward. {ECO:0000269|PubMed:25564655}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in apical meristems and young epidermal tissue including trichomes and stipules. Expressed in lateral root tips, the L1 layer of apical inflorescence meristems and early flower primordia, carpel and petal epidermis, stigma papillae, ovule primordia, nucellus and embryo. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.017G144600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU275541 | 1e-144 | GU275541.1 Populus balsamifera isolate POR11 haplotype B unknown gene, partial sequence. | |||
GenBank | GU275542 | 1e-144 | GU275542.1 Populus balsamifera isolate GIL14 haplotype A unknown gene, partial sequence. | |||
GenBank | GU275543 | 1e-144 | GU275543.1 Populus balsamifera isolate GIL14 haplotype B unknown gene, partial sequence. | |||
GenBank | GU275544 | 1e-144 | GU275544.1 Populus balsamifera isolate KUU07 haplotype A unknown gene, partial sequence. | |||
GenBank | GU275545 | 1e-144 | GU275545.1 Populus balsamifera isolate KUU07 haplotype B unknown gene, partial sequence. | |||
GenBank | GU275546 | 1e-144 | GU275546.1 Populus balsamifera isolate MGR10 haplotype A unknown gene, partial sequence. | |||
GenBank | GU275547 | 1e-144 | GU275547.1 Populus balsamifera isolate MGR10 haplotype B unknown gene, partial sequence. | |||
GenBank | GU275548 | 1e-144 | GU275548.1 Populus balsamifera isolate STO11 haplotype A unknown gene, partial sequence. | |||
GenBank | GU275549 | 1e-144 | GU275549.1 Populus balsamifera isolate STO11 haplotype B unknown gene, partial sequence. | |||
GenBank | GU275550 | 1e-144 | GU275550.1 Populus balsamifera isolate WHR03 haplotype A unknown gene, partial sequence. | |||
GenBank | GU275552 | 1e-144 | GU275552.1 Populus balsamifera isolate FRE01 haplotype A unknown gene, partial sequence. | |||
GenBank | GU275554 | 1e-144 | GU275554.1 Populus balsamifera isolate GAL12 haplotype A unknown gene, partial sequence. | |||
GenBank | GU275556 | 1e-144 | GU275556.1 Populus balsamifera isolate HAY07 haplotype A unknown gene, partial sequence. | |||
GenBank | GU275557 | 1e-144 | GU275557.1 Populus balsamifera isolate HAY07 haplotype B unknown gene, partial sequence. | |||
GenBank | GU275558 | 1e-144 | GU275558.1 Populus balsamifera isolate LOV02 haplotype A unknown gene, partial sequence. | |||
GenBank | GU275559 | 1e-144 | GU275559.1 Populus balsamifera isolate LOV02 haplotype B unknown gene, partial sequence. | |||
GenBank | GU275560 | 1e-144 | GU275560.1 Populus balsamifera isolate RNA13 haplotype A unknown gene, partial sequence. | |||
GenBank | GU275561 | 1e-144 | GU275561.1 Populus balsamifera isolate RNA13 haplotype B unknown gene, partial sequence. | |||
GenBank | GU275562 | 1e-144 | GU275562.1 Populus balsamifera isolate STL13 haplotype A unknown gene, partial sequence. | |||
GenBank | GU275563 | 1e-144 | GU275563.1 Populus balsamifera isolate STL13 haplotype B unknown gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011038413.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG11-like | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | A0A2K2AR95 | 0.0 | A0A2K2AR95_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s01400.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1026 | 33 | 98 |
Representative plant | OGRP145 | 15 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |
Link Out ? help Back to Top | |
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Phytozome | Potri.017G144600.1 |
Entrez Gene | 7496603 |