PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB

Protein Properties

Length: 245aa MW: 27227.7 Da PI: 8.9296

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.017G128900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.3	5.5e-16	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ +Ed++l+d++k +G g+W++ + g++R++k+c++rw +yl Potri.017G128900.1 13 KGAWSVQEDQKLIDYIKTHGEGCWRSLPMAAGLHRCGKSCRLRWINYL 60 79********************************************97 PP
2	Myb_DNA-binding	53.1	7.6e-17	66	111	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Potri.017G128900.1 66 RGNFGQDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 111 899*****************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-22	4	62	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.742	8	60	IPR017930	Myb domain
SuperFamily	SSF46689	2.93E-28	11	107	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-13	12	62	IPR001005	SANT/Myb domain
Pfam	PF00249	4.9E-14	13	60	IPR001005	SANT/Myb domain
CDD	cd00167	2.65E-10	15	60	No hit	No description
PROSITE profile	PS51294	25.917	61	115	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.8E-26	63	116	IPR009057	Homeodomain-like
SMART	SM00717	7.0E-16	65	113	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-15	66	111	IPR001005	SANT/Myb domain
CDD	cd00167	2.53E-11	68	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MRKPCCDKQG NNKGAWSVQE DQKLIDYIKT HGEGCWRSLP MAAGLHRCGK SCRLRWINYL 60 RPDIKRGNFG QDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH LKKKLINMGI 120 DPNNHRLNQI LPRPQTEPAP VLATSTTTGS KNTITTSKPE KSSNDDSDRV SDTASCLEDD 180 YKSLVKQQVA TSGSSNINLD LTIAAPASPG HKTSFGNEQQ NCNWGKTCQV ESEPTSLPTL 240 ILFR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	9e-27	13	115	7	108	B-MYB
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, flower buds, and siliques. {ECO:0000269\|PubMed:9839469}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.017G128900.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269\|PubMed:9839469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP723392	0.0	KP723392.1 Populus tremula x Populus tremuloides clone INRA 353-38 R2R3 MYB flavonoid repressor protein (MYB182) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006372586.1	0.0	transcription repressor MYB6
Swissprot	Q38851	2e-73	MYB6_ARATH; Transcription repressor MYB6
TrEMBL	U5FGW1	0.0	U5FGW1_POPTR; Uncharacterized protein
STRING	POPTR_0017s02990.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF264	34	221
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09460.1	2e-74	myb domain protein 6

Link Out ? help Back to Top
Phytozome	Potri.017G128900.1
Entrez Gene	18106646