PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G126000.1
Common NamePOPTR_0005s14450g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 263aa    MW: 29705.8 Da    PI: 9.0805
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G126000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-17956148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT eEd ll d+v+++G g+W+ ++++ g++R++k+c++rw++yl
  Potri.017G126000.1  9 KGAWTREEDILLRDCVEKYGEGRWHQVSSKAGLNRCRKSCRLRWLSYL 56
                        79*******************************************997 PP
2Myb_DNA-binding45.81.4e-1462110147
                         TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                         rg  +++E++l+++++++lG++    W++Ia +++ gRt++++k++w++ 
  Potri.017G126000.1  62 RGQYSEDEEDLIIKLHRLLGNRqvkMWSLIAGRLP-GRTANDLKNYWNTN 110
                         7899*******************************.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.781460IPR017930Myb domain
SuperFamilySSF466891.21E-266107IPR009057Homeodomain-like
SMARTSM007176.6E-16858IPR001005SANT/Myb domain
PfamPF002493.3E-16956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-221063IPR009057Homeodomain-like
CDDcd001673.30E-111156No hitNo description
SMARTSM007175.8E-1261113IPR001005SANT/Myb domain
PROSITE profilePS5129417.39261115IPR017930Myb domain
PfamPF002494.0E-1362111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-2064115IPR009057Homeodomain-like
CDDcd001671.02E-965111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MVSSSGIRKG AWTREEDILL RDCVEKYGEG RWHQVSSKAG LNRCRKSCRL RWLSYLKPGI  60
KRGQYSEDEE DLIIKLHRLL GNRQVKMWSL IAGRLPGRTA NDLKNYWNTN LSKKVVSGTR  120
EAQTKPEPKA ITKANIIKPR PHKFKSLCWL RGKGIPFFNG GFQYGYDLCK PWSTSALSPS  180
DIIEVESMRW ESLLDDKEIS VSSNTGCLRS GSESDQEPIK SLFAEDSAPE GMRIGDVFCE  240
QGQHCWSGNS FDAADLWNLV NT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-21211520128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G126000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7233940.0KP723394.1 Populus tremula x Populus tremuloides clone INRA 353-38 R2R3 MYB transcription factor (MYB117) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024444725.10.0uncharacterized protein LOC18099377
SwissprotQ9FNV93e-56MY113_ARATH; Transcription factor MYB113
TrEMBLA0A2K1X7340.0A0A2K1X734_POPTR; Uncharacterized protein
STRINGPOPTR_0005s14450.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-58myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]